Factsheet for PGSC0003DMT400015638

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g083080.2.1	Tomato	nucleus	97.45	96.74
PGSC0003DMT400060016	Potato	cytosol	85.04	86.14
Zm00001d038818_P001	Maize	cytosol	44.16	83.74
Zm00001d034259_P001	Maize	cytosol	21.72	80.95
VIT_14s0030g01270.t01	Wine grape	nucleus	84.31	80.63
Zm00001d007484_P001	Maize	cytosol	49.45	79.01
KRH29399	Soybean	nucleus	77.55	77.13
KRH24415	Soybean	nucleus	78.1	76.98
CDX80674	Canola	cytosol	75.0	76.68
Bra009978.1-P	Field mustard	nucleus	74.45	75.98
CDX86179	Canola	nucleus	74.45	75.98
AT3G05060.1	Thale cress	cytosol	73.72	75.8
Bra036111.1-P	Field mustard	nucleus	74.09	75.75
CDY00004	Canola	nucleus	74.09	75.75
CDY19706	Canola	nucleus	73.91	75.7
TraesCS2A01G119400.1	Wheat	nucleus	76.64	75.0
TraesCS2D01G120400.1	Wheat	nucleus	76.64	75.0
HORVU2Hr1G020690.6	Barley	cytosol	73.91	75.0
GSMUA_Achr11P...	Banana	cytosol	79.56	74.53
AT5G27120.1	Thale cress	cytosol	72.45	74.48
TraesCS1B01G379200.1	Wheat	cytosol	76.09	74.46
CDY52494	Canola	nucleus	71.53	73.82
GSMUA_Achr8P09940_001	Banana	cytosol	78.65	73.3
HORVU4Hr1G041810.4	Barley	cytosol	72.45	73.11
Os03t0350100-02	Rice	nucleus	75.73	73.06
Bra020601.1-P	Field mustard	nucleus	64.78	72.75
Os03t0350300-01	Rice	nucleus	75.36	72.71
Zm00001d011996_P002	Maize	cytosol	40.88	72.49
KXG39385	Sorghum	cytosol	75.0	72.23
Zm00001d047481_P003	Maize	plastid	73.72	71.89
Zm00001d029144_P004	Maize	cytosol	73.72	71.63
KXG34017	Sorghum	cytosol	74.09	71.48
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	68.25	71.24
TraesCS4A01G141500.1	Wheat	nucleus	72.81	69.03
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	76.09	68.7
AT5G27140.2	Thale cress	cytosol	52.37	63.78
Zm00001d031027_P001	Maize	plastid	56.57	52.45
Zm00001d036776_P001	Maize	mitochondrion	55.66	49.59
PGSC0003DMT400007150	Potato	nucleus	39.6	39.24
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	16.97	20.39
PGSC0003DMT400012169	Potato	nucleus	16.61	18.84
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	14.78	17.61

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:102585448	MapMan:17.1.1.2.1.5.3	ncoils:Coil
InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M1A6C0	InterPro:NOP5_N	InterPro:NOSIC
InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	EnsemblPlantsGene:PGSC0003DMG400006104	PGSC:PGSC0003DMG400006104
EnsemblPlants:PGSC0003DMT400015638	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI00029522BB	RefSeq:XP_015158347.1	SEG:seg	:	:	:

Description

MAR-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006104]

Coordinates

chr9:-:55116198..55120131

Molecular Weight (calculated)

60600.9 Da

IEP (calculated)

9.590

GRAVY (calculated)

-0.582

Length

548 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLSKVEDLWK DFSSTDSARK VVKLKAFSKF ENTSEALSAA TLLIDSKPSK GLRKFLKAHC DGETLAVADS KLGNAIKEKL
101: QIDCVHNNAV MELMRGVRSQ LTELISGLAS QDLAPMSLGL SHSLSRYKLK FSPDKVDTMI VQAIGLLDDL DKELNTYAMR VREWYGWHFP ELAKIVQDNI
201: LYAKAVKLMG DRTNAAKLDF SEILPEEVEA ALKEASMISM GTEVSDLDLE NIKDLCTQVL SFSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLIAHG
301: GSLMNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KHKGKISRSL AAKTALAIRY DALADSQDNT MGLENRAKLE ARLRALEGKE
401: LSKSAGSAKG KPKIEVYDKD RKKGGLITPA KVYNPSADSV MGHTENEEKK MSIDDQTEEA AGEESPVTEG EKKKKKKKKS AETENGAEPE DTGKKEKKKK
501: KKHADNEVEN VELEQSKKKK RKHADVDEDE SVTTEKKKEK KKKKKAEE

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.