Factsheet for PGSC0003DMT400012169

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078430.2.1	Tomato	nucleus	99.17	99.17
KRG94405	Soybean	nucleus	88.61	88.07
KRH07033	Soybean	nucleus	88.61	88.07
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	87.37	85.77
OQU82106	Sorghum	nucleus	85.51	85.33
Zm00001d002716_P002	Maize	nucleus	85.09	84.74
Os04t0555400-01	Rice	nucleus	83.85	83.68
Os07t0141600-01	Rice	nucleus	83.85	83.68
VIT_01s0026g00230.t01	Wine grape	cytosol	87.58	83.1
TraesCS1A01G376100.1	Wheat	nucleus	81.99	81.65
TraesCS1D01G383400.2	Wheat	nucleus	81.99	81.65
TraesCS2B01G046400.1	Wheat	nucleus	80.12	81.3
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.78	76.55
TraesCS2B01G267700.1	Wheat	cytosol	71.64	73.93
GSMUA_Achr9P14550_001	Banana	plasma membrane	64.6	71.4
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	65.63	68.91
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	64.39	68.2
KXG30826	Sorghum	nucleus	61.7	68.19
Os02t0730100-00	Rice	extracellular	18.43	60.54
AT1G70400.3	Thale cress	cytosol	30.02	52.92
PGSC0003DMT400060016	Potato	cytosol	18.84	16.82
PGSC0003DMT400015638	Potato	cytosol	18.84	16.61
PGSC0003DMT400007150	Potato	nucleus	17.6	15.37

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:102587736	MapMan:16.4.1.3.3	GO:GO:0000244
GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	UniProt:M1A0U7	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF09785	EnsemblPlantsGene:PGSC0003DMG400004771	PGSC:PGSC0003DMG400004771	EnsemblPlants:PGSC0003DMT400012169	PFscan:PS51358
PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI000296D5B3	RefSeq:XP_006355421.1	SEG:seg	:	:	:

Description

Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Source:PGSC_GENE;Acc:PGSC0003DMG400004771]

Coordinates

chr8:-:52082790..52087299

Molecular Weight (calculated)

52675.1 Da

IEP (calculated)

5.663

GRAVY (calculated)

-0.346

Length

483 amino acids

Sequence
(BLAST)

001: MATLADSFLA DLDELSDNEA DVIDEENLDV DQMEEDGDLA DIEALNYDDL DNVSKLQKSR RYIDIMQKVE DALEKESDVT NKGVVLEDEP EYQLIVDCNA
101: LSVDIENEIV IIHNFIRDKY RLKFPELESL VHHPIDYARV VKKIGNEIDL TLVDLEGLLP SAIIMVVSVT ASTTSGKPLP EDVLQKTVEA CDRALALDSA
201: KKKVLDFVES RMGYIAPNLS AVVGSAVAAK LMGTAGGLSS LAKMPACNVQ LLGAKRKNLA GFSTATSQFH VGYIEQTELF QSTPPSLRMR ACRLMAAKST
301: LAARVDSING DPVGKTGRSL REEIRKKIEK WQEPPPAKQP RPLPVPDSEP KKKRGGRRLR KMKERYAITD MRKLANRMQF GIPEESSLGD GLGEGYGMLG
401: QAGSGKLRVS VGQSKLAAKV AKKFKEKSYG SSGATSGLTS SLAFTPVQGI ELSNPQALAN QLGSGTQSTY FSDTGTFSKI KRT

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.