Factsheet for TraesCS1B01G396600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

mitochondrion 1
peroxisome 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G383400.2	Wheat	nucleus	93.22	99.18
TraesCS1A01G376100.1	Wheat	nucleus	93.22	99.18
TraesCS2B01G046400.1	Wheat	nucleus	90.89	98.53
Os07t0141600-01	Rice	nucleus	84.69	90.29
Zm00001d002716_P002	Maize	nucleus	84.69	90.1
OQU82106	Sorghum	nucleus	84.5	90.08
Os04t0555400-01	Rice	nucleus	83.91	89.46
TraesCS2B01G267700.1	Wheat	cytosol	77.91	85.9
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.84	83.74
Solyc08g078430.2.1	Tomato	nucleus	76.55	81.78
PGSC0003DMT400012169	Potato	nucleus	76.55	81.78
KRG94405	Soybean	nucleus	76.74	81.48
KRH07033	Soybean	nucleus	76.74	81.48
CDY72546	Canola	nucleus	63.18	77.62
VIT_01s0026g00230.t01	Wine grape	cytosol	76.16	77.21
Bra031522.1-P	Field mustard	nucleus	71.12	75.51
CDY04340	Canola	plasma membrane	68.41	74.32
AT1G60170.1	Thale cress	nucleus	69.57	74.02
CDY24519	Canola	nucleus	68.02	72.22
CDY54131	Canola	mitochondrion	68.02	71.05
GSMUA_Achr9P14550_001	Banana	plasma membrane	58.14	68.65
CDY39628	Canola	nucleus	57.56	65.13
CDY36542	Canola	nucleus	52.71	64.92
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	56.59	64.46
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	57.17	64.13
Bra026149.1-P	Field mustard	nucleus	59.88	63.84
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	56.2	63.6
AT1G70400.3	Thale cress	cytosol	25.97	48.91
TraesCS1B01G379200.1	Wheat	cytosol	18.99	17.5
TraesCS2B01G148000.1	Wheat	nucleus	17.05	16.3
TraesCS2B01G147900.1	Wheat	plastid	14.53	16.2
TraesCS1B01G401000.1	Wheat	nucleus	17.05	16.03
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	18.22	15.49

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:GO:0000244	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931
SUPFAM:SSF89124	EnsemblPlantsGene:TraesCS1B01G396600	EnsemblPlants:TraesCS1B01G396600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:628050255..628054197

Molecular Weight (calculated)

56175.3 Da

IEP (calculated)

6.643

GRAVY (calculated)

-0.296

Length

516 amino acids

Sequence
(BLAST)

001: MVSPVKQLGN LKFAIYVWHW SHVMFLNCAT SQASLADSFL ADLDELSDNE AYPEEDNAEA VGMDEDGDDD MPDLESLNYD DLDSVSKLQK TQRYSDIMQK
101: VEGALEKDTY LSNQGFILEE DPEYQLIVDC NALSVDIENE LIIIHNFIRD KYRLKFPELE SLVHHPIDYA RVVKKIANEV DITLVDLEGL LPSAVIMVVS
201: VTASTTSGKP LSQENLVKTI EACDRALNLD AAKKKVLDFV EGKMGYIAPN LSAIVGSAVA AKLMGIAGGL GALAKMPACN VQLLGAKKKN LAGFSSATSQ
301: FRVGYLEQAE VFQSTPPALR TRACRVIAAK ATLAARIDST RGDPTGKAGR NLLEEIRKKI EKWQEPPPAK LPKPLPVPDS EPKKKRGGRR LRKMKERYAV
401: TDMMKLANRM QFGIPEESSL GDGLGEGYGM LGQAGSGKLR VSAAQNKLAA KVAKKFKERS YGSGGATSGL TSSLAFTPVQ GIELSNPHAQ GNLLGSGTQS
501: TYFSETGTFS RIHNRP

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.