Factsheet for Solyc07g064070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	88.74	87.39
Solyc01g094310.1.1	Tomato	cytosol	15.23	75.82
Solyc08g078430.2.1	Tomato	nucleus	69.32	65.01
Zm00001d002716_P002	Maize	nucleus	66.67	62.27
OQU82106	Sorghum	nucleus	66.45	62.19
Os04t0555400-01	Rice	nucleus	66.0	61.78
KRG94405	Soybean	nucleus	66.0	61.52
KRH07033	Soybean	nucleus	66.0	61.52
Os07t0141600-01	Rice	nucleus	65.12	60.95
TraesCS1D01G383400.2	Wheat	nucleus	64.68	60.41
TraesCS1A01G376100.1	Wheat	nucleus	64.68	60.41
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.56	60.37
TraesCS2B01G046400.1	Wheat	nucleus	63.13	60.08
VIT_01s0026g00230.t01	Wine grape	cytosol	64.9	57.76
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.46	56.59
TraesCS2B01G267700.1	Wheat	cytosol	58.28	56.41
KXG30826	Sorghum	nucleus	54.3	56.29
Solyc01g094300.1.1	Tomato	extracellular	25.39	53.0
GSMUA_Achr9P14550_001	Banana	plasma membrane	49.23	51.03
Os02t0730100-00	Rice	extracellular	15.67	48.3
AT1G70400.3	Thale cress	cytosol	27.37	45.26
Solyc05g055880.2.1	Tomato	nucleus	17.22	15.2
Solyc09g083080.2.1	Tomato	nucleus	17.88	14.67
Solyc01g100570.2.1	Tomato	nucleus	16.34	13.38

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:GO:0000244	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005687	GO:GO:0005690
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540
GO:GO:0071011	GO:GO:0097526	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:K4CH90
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785	PFscan:PS51358
PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124
EnsemblPlantsGene:Solyc07g064070.1	EnsemblPlants:Solyc07g064070.1.1	UniParc:UPI000276C22A	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:66359714..66361075

Molecular Weight (calculated)

49853.3 Da

IEP (calculated)

8.816

GRAVY (calculated)

-0.244

Length

453 amino acids

Sequence
(BLAST)

001: MALVDSFIAD LDELDVLSDD VHGKADMDDF DNISKLQKSR RYVDIMQKVE DANKGDVIIE EDDHEYKLIV DCNALSVEIE DEIFIIHNFI RDMYRLKFPE
101: LDSLVNHPVD YARVVKKIGN ETDLTLVDLQ ELLPSAIIMV VSVTASTTSG KPLPEDVLQR TLEACDRTLA LDSSKKKVVD FVESRMSTIA PNLCGVVGSA
201: VAAKLMCCAG GLSLLANMPA DNVRSLGGKR KNLAGFSTAN ALRFCYIEET DVYQSTPPSL RVKVCRILAN KAILAARMDL SKAGMFNFKE EICKKMEKLQ
301: ELPPARLPKP LPVPDFRSKK QRGGVRHRKR KDLYQVTEAQ KLRNRVKFGL PEESSLGDGL GVGYGMLGQA GSGKLLVSAR QNKKKAKIYK VKSYGGSGAA
401: ARSGLMSSSF AFTPAQGIEL SNPQAYTDGT QSAYFSETGT FSKIKRQKSV FGV

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.