Factsheet for Solyc01g100570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007150	Potato	nucleus	98.19	98.19
VIT_17s0000g01720.t01	Wine grape	nucleus	81.19	80.47
KRH57211	Soybean	nucleus	77.4	77.82
KRH03927	Soybean	nucleus	77.03	77.6
KRH48644	Soybean	nucleus	77.03	77.17
AT3G12860.1	Thale cress	nucleus	69.08	76.55
AT1G56110.1	Thale cress	nucleus	71.79	76.05
Os07t0661800-01	Rice	nucleus	42.68	75.4
GSMUA_Achr5P08210_001	Banana	nucleus	74.68	74.28
GSMUA_AchrUn_...	Banana	nucleus	74.14	73.48
EER92268	Sorghum	nucleus	72.88	73.27
Zm00001d029174_P005	Maize	nucleus	72.51	73.04
TraesCS2B01G148000.1	Wheat	nucleus	70.89	72.59
TraesCS2D01G128600.1	Wheat	nucleus	70.34	72.17
TraesCS2A01G125500.1	Wheat	nucleus	70.16	71.99
Os03t0352300-01	Rice	nucleus	71.43	71.56
TraesCS1D01G386500.1	Wheat	nucleus	70.89	71.53
TraesCS1A01G379300.1	Wheat	nucleus	70.89	71.53
TraesCS1B01G401000.1	Wheat	nucleus	70.89	71.4
Zm00001d047472_P002	Maize	plastid	72.33	70.3
HORVU2Hr1G022140.3	Barley	nucleus	69.98	69.11
HORVU1Hr1G083960.6	Barley	nucleus	70.34	69.09
EER97682	Sorghum	endoplasmic reticulum	69.8	68.32
HORVU2Hr1G022110.2	Barley	plastid	65.82	66.54
TraesCS2D01G128500.1	Wheat	plastid	55.7	66.24
TraesCS2B01G147900.1	Wheat	plastid	54.97	65.66
TraesCS2A01G125400.1	Wheat	cytosol, plastid	54.97	65.52
HORVU2Hr1G022120.1	Barley	mitochondrion	56.96	61.64
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	22.6	55.56
CDY08399	Canola	endoplasmic reticulum, plasma membrane	14.65	45.76
Solyc05g055880.2.1	Tomato	nucleus	38.52	41.52
Solyc09g083080.2.1	Tomato	nucleus	39.24	39.31
Solyc01g094300.1.1	Tomato	extracellular	8.32	21.2
Solyc01g094310.1.1	Tomato	cytosol	3.25	19.78
Solyc08g078430.2.1	Tomato	nucleus	16.09	18.43
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	13.38	16.34

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	ncoils:Coil	GO:GO:0000154
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030515	GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	UniProt:K4B188	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931
SUPFAM:SSF89124	EnsemblPlantsGene:Solyc01g100570.2	EnsemblPlants:Solyc01g100570.2.1	UniParc:UPI00027676D3	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:90559425..90563227

Molecular Weight (calculated)

62147.3 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.616

Length

553 amino acids

Sequence
(BLAST)

001: MALYLLYESA SGYGLFLAHG IDEIGQNTEA VRNSIDDLNR FGKVVKIEAF NPFESALDAL NQCNAVSEGQ MTEELQNFLE RSLPKVKEGK KAKFSLGLAE
101: PKLGSHIHEV TKIPCQSNEF VLEILRGVRL HFEKFVKNLK PGDSEKAQLG LSHSYSRAKV KFNVNRVDNM VTQAIVLLDT LDKDINTFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVAKFV DDKSQLSEDK ISALTEIVGD EDKAKEIVEA AKASMGQDLS PVDLINVKLF AQRVMDLVEY RKNLYDYLVA KMHDIAPNLA
301: ALIGEVVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTKGNTPK YGLIFHSSFI GRASARNKGR MARYLANKCS IASRLDCFLD KSTTTFGEKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIET VEDKDTEMDV DEPSTKKSKK KKSKVDVVEY AQPMIEDKPL ETNGDASEEP KSEKKKKKKE KRKSEEEAEH
501: EEDQTVGNGN GVHEDGTAKK KKKKKNKEDN GEELQAAVEI KKKKKKSKVQ DDE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.