Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08399 | Canola | endoplasmic reticulum, plasma membrane | 73.33 | 93.22 |
| Os07t0661800-01 | Rice | nucleus | 56.0 | 40.26 |
| Bra001474.1-P | Field mustard | nucleus | 65.78 | 29.31 |
| Bra033094.1-P | Field mustard | cytosol | 55.11 | 27.87 |
| Bra030816.1-P | Field mustard | nucleus | 64.0 | 27.75 |
| Bra040785.1-P | Field mustard | nucleus | 64.0 | 27.64 |
| GSMUA_Achr5P08210_001 | Banana | nucleus | 60.89 | 24.64 |
| VIT_17s0000g01720.t01 | Wine grape | nucleus | 60.0 | 24.19 |
| KRH48644 | Soybean | nucleus | 59.11 | 24.09 |
| KRH57211 | Soybean | nucleus | 58.67 | 24.0 |
| Zm00001d029174_P005 | Maize | nucleus | 58.22 | 23.86 |
| EER92268 | Sorghum | nucleus | 58.22 | 23.82 |
| KRH03927 | Soybean | nucleus | 57.78 | 23.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.67 | 23.66 |
| Os03t0352300-01 | Rice | nucleus | 57.33 | 23.37 |
| Zm00001d047472_P002 | Maize | plastid | 58.22 | 23.02 |
| TraesCS2D01G128600.1 | Wheat | nucleus | 54.22 | 22.63 |
| PGSC0003DMT400007150 | Potato | nucleus | 55.56 | 22.6 |
| Solyc01g100570.2.1 | Tomato | nucleus | 55.56 | 22.6 |
| TraesCS2B01G148000.1 | Wheat | nucleus | 54.22 | 22.59 |
| TraesCS2A01G125500.1 | Wheat | nucleus | 53.78 | 22.45 |
| TraesCS1D01G386500.1 | Wheat | nucleus | 53.78 | 22.08 |
| TraesCS1A01G379300.1 | Wheat | nucleus | 53.78 | 22.08 |
| TraesCS1B01G401000.1 | Wheat | nucleus | 53.78 | 22.04 |
| EER97682 | Sorghum | endoplasmic reticulum | 55.11 | 21.95 |
| HORVU2Hr1G022140.3 | Barley | nucleus | 53.33 | 21.43 |
| HORVU1Hr1G083960.6 | Barley | nucleus | 53.33 | 21.31 |
| HORVU2Hr1G022120.1 | Barley | mitochondrion | 48.0 | 21.14 |
| TraesCS2B01G147900.1 | Wheat | plastid | 43.11 | 20.95 |
| TraesCS2D01G128500.1 | Wheat | plastid | 42.67 | 20.65 |
| TraesCS2A01G125400.1 | Wheat | cytosol, plastid | 42.22 | 20.47 |
| HORVU2Hr1G022110.2 | Barley | plastid | 48.44 | 19.93 |
| Bra009978.1-P | Field mustard | nucleus | 33.78 | 14.15 |
| Bra036111.1-P | Field mustard | nucleus | 32.89 | 13.81 |
| Bra020601.1-P | Field mustard | nucleus | 25.33 | 11.68 |
| Bra031522.1-P | Field mustard | nucleus | 10.67 | 4.94 |
| Bra026149.1-P | Field mustard | nucleus | 8.89 | 4.13 |
Protein Annotations
| EnsemblPlants:Bra034724.1 | EnsemblPlants:Bra034724.1-P | EnsemblPlantsGene:Bra034724 | Gene3D:1.10.287.660 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOSIC | InterPro:Nop_dom |
| InterPro:Nop_dom_sf | PANTHER:PTHR10894 | PANTHER:PTHR10894:SF0 | PFAM:PF01798 | SEG:seg | SMART:SM00931 |
| SUPFAM:SSF89124 | TMHMM:TMhelix | UniParc:UPI0002548183 | UniProt:M4F0X9 | MapMan:35.1 | : |
Description
AT3G12860 (E=1e-062) | nucleolar protein Nop56, putative
Coordinates
chrA05:-:21161637..21164310
Molecular Weight (calculated)
26284.4 Da
IEP (calculated)
10.000
GRAVY (calculated)
-0.048
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGSTLALLR YVLFLGFSLL EFFFRIGFGC HFGYRVKCPP LLLQLPYNKA LYLGYMSKEL RSFCLPISLL WFGQRSVLAS LKPRRFLCQS NEFVHELLRG
101: VRQHFDRFIK DLKKRRNLDL AHSYSRAKVK FNFNRVDDMV IQAIFLLDTL AKDINSFDMR VRELYSWHFP ELVKIVNDNY LCARVSKVIK DKSKLSEEHI
201: PMLTDILGDE DKAKEVVEAG KASMG
101: VRQHFDRFIK DLKKRRNLDL AHSYSRAKVK FNFNRVDDMV IQAIFLLDTL AKDINSFDMR VRELYSWHFP ELVKIVNDNY LCARVSKVIK DKSKLSEEHI
201: PMLTDILGDE DKAKEVVEAG KASMG
001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
Arabidopsis Description
NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.