Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44398 | Canola | cytosol | 100.0 | 100.0 |
| Bra001474.1-P | Field mustard | nucleus | 73.03 | 64.36 |
| Os07t0661800-01 | Rice | nucleus | 44.72 | 63.58 |
| Bra040785.1-P | Field mustard | nucleus | 72.58 | 62.0 |
| Bra030816.1-P | Field mustard | nucleus | 71.91 | 61.66 |
| Bra034724.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 27.87 | 55.11 |
| GSMUA_Achr5P08210_001 | Banana | nucleus | 65.84 | 52.7 |
| TraesCS2A01G125400.1 | Wheat | cytosol, plastid | 54.38 | 52.16 |
| TraesCS2B01G147900.1 | Wheat | plastid | 54.16 | 52.05 |
| TraesCS2D01G128500.1 | Wheat | plastid | 54.38 | 52.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.94 | 51.79 |
| TraesCS2A01G125500.1 | Wheat | nucleus | 62.7 | 51.76 |
| TraesCS2B01G148000.1 | Wheat | nucleus | 62.7 | 51.67 |
| Zm00001d029174_P005 | Maize | nucleus | 63.6 | 51.55 |
| EER92268 | Sorghum | nucleus | 63.6 | 51.45 |
| TraesCS2D01G128600.1 | Wheat | nucleus | 62.25 | 51.39 |
| Os03t0352300-01 | Rice | nucleus | 62.25 | 50.18 |
| TraesCS1A01G379300.1 | Wheat | nucleus | 61.57 | 50.0 |
| TraesCS1D01G386500.1 | Wheat | nucleus | 61.57 | 50.0 |
| TraesCS1B01G401000.1 | Wheat | nucleus | 61.57 | 49.91 |
| Zm00001d047472_P002 | Maize | plastid | 63.15 | 49.38 |
| HORVU2Hr1G022140.3 | Barley | nucleus | 61.35 | 48.75 |
| HORVU2Hr1G022120.1 | Barley | mitochondrion | 55.51 | 48.34 |
| EER97682 | Sorghum | endoplasmic reticulum | 61.35 | 48.32 |
| HORVU1Hr1G083960.6 | Barley | nucleus | 60.9 | 48.13 |
| HORVU2Hr1G022110.2 | Barley | plastid | 55.96 | 45.52 |
| Bra009978.1-P | Field mustard | nucleus | 40.22 | 33.33 |
| Bra020601.1-P | Field mustard | nucleus | 35.96 | 32.79 |
| Bra036111.1-P | Field mustard | nucleus | 39.33 | 32.65 |
| Bra031522.1-P | Field mustard | nucleus | 17.98 | 16.46 |
| Bra026149.1-P | Field mustard | nucleus | 17.08 | 15.7 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | MapMan:17.1.1.2.1.5.2 | EnsemblPlantsGene:Bra033094 | EnsemblPlants:Bra033094.1 |
| EnsemblPlants:Bra033094.1-P | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | UniProt:M4EWB0 | InterPro:NOP5_N |
| InterPro:NOSIC | InterPro:Nop_dom | InterPro:Nop_dom_sf | PFAM:PF01798 | PFAM:PF08156 | PFscan:PS51358 |
| PANTHER:PTHR10894 | PANTHER:PTHR10894:SF0 | SMART:SM00931 | SUPFAM:SSF89124 | UniParc:UPI0002546E49 | SEG:seg |
Description
AT3G12860 (E=4e-163) | nucleolar protein Nop56, putative
Coordinates
chrA02:+:21454179..21456122
Molecular Weight (calculated)
49356.3 Da
IEP (calculated)
4.800
GRAVY (calculated)
-0.307
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMFVLYESS SGYALFDVHG LNEIGQNVEA VQSSVSDLAR FGQVVKLTAF HPWQTAQDAL NQVNAVSEGF MSEELRSFLE LNLPKAEEGK ETKFSLGVSD
101: PKLGSCISEA TKIPCQSNEF VQELLRGVRQ HFDSFINDFK PGGLEKPQVG LALSYSRAKV KYNVNKEDHM VIQTISLLDT LDKDINSYAM RTREWYSPHF
201: PELDKIVNYD NYMYAQASKI IEDKSKLSEE HVTILTEVLG DEDKARELVE AGQASMGPDL SPLDLLHAQT FAQGVIDLTD YRKKLYDYLV VKVKDVAPNL
301: AALIGETVAA RLISHAGSLR NLAKHPSSTL QILGAERALR RALRTGGKTP KHGLIVHSSF IGRASARNKG RMARCLAAKC SIAARVDYFG DSSSADFGEK
401: LRVEVEERLD SLHNVYAMEE VLEDEEIVDA SGEEIDEEEA ADDVE
101: PKLGSCISEA TKIPCQSNEF VQELLRGVRQ HFDSFINDFK PGGLEKPQVG LALSYSRAKV KYNVNKEDHM VIQTISLLDT LDKDINSYAM RTREWYSPHF
201: PELDKIVNYD NYMYAQASKI IEDKSKLSEE HVTILTEVLG DEDKARELVE AGQASMGPDL SPLDLLHAQT FAQGVIDLTD YRKKLYDYLV VKVKDVAPNL
301: AALIGETVAA RLISHAGSLR NLAKHPSSTL QILGAERALR RALRTGGKTP KHGLIVHSSF IGRASARNKG RMARCLAAKC SIAARVDYFG DSSSADFGEK
401: LRVEVEERLD SLHNVYAMEE VLEDEEIVDA SGEEIDEEEA ADDVE
001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE
Arabidopsis Description
NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.