Factsheet for Bra026149.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36542	Canola	nucleus	85.54	98.81
Bra031522.1-P	Field mustard	nucleus	71.69	71.4
KRG94405	Soybean	nucleus	66.53	66.26
KRH07033	Soybean	nucleus	66.32	66.05
Os04t0555400-01	Rice	nucleus	64.26	64.26
OQU82106	Sorghum	nucleus	64.26	64.26
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.29	64.23
Zm00001d002716_P002	Maize	nucleus	64.26	64.12
Os07t0141600-01	Rice	nucleus	64.05	64.05
TraesCS1A01G376100.1	Wheat	nucleus	64.05	63.92
TraesCS1D01G383400.2	Wheat	nucleus	64.05	63.92
TraesCS2B01G046400.1	Wheat	nucleus	62.4	63.45
VIT_01s0026g00230.t01	Wine grape	cytosol	63.84	60.71
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.84	59.88
TraesCS2B01G267700.1	Wheat	cytosol	55.58	57.48
KXG30826	Sorghum	nucleus	49.59	54.92
GSMUA_Achr9P14550_001	Banana	plasma membrane	49.17	54.46
Os02t0730100-00	Rice	extracellular	14.88	48.98
Bra009978.1-P	Field mustard	nucleus	19.83	17.88
Bra040785.1-P	Field mustard	nucleus	18.8	17.47
Bra033094.1-P	Field mustard	cytosol	15.7	17.08
Bra020601.1-P	Field mustard	nucleus	17.15	17.01
Bra036111.1-P	Field mustard	nucleus	18.8	16.98
Bra030816.1-P	Field mustard	nucleus	18.18	16.96
Bra001474.1-P	Field mustard	nucleus	17.36	16.63
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	4.13	8.89

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	EnsemblPlantsGene:Bra026149	EnsemblPlants:Bra026149.1
EnsemblPlants:Bra026149.1-P	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0046540	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M4EBJ0	InterPro:NOSIC
InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904
PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000253F035
SEG:seg	:	:	:	:	:

Description

AT1G60170 (E=3e-156) emb1220 | emb1220 (embryo defective 1220)

Coordinates

chrA06:+:5868350..5869804

Molecular Weight (calculated)

52540.4 Da

IEP (calculated)

9.061

GRAVY (calculated)

-0.323

Length

484 amino acids

Sequence
(BLAST)

001: MAELEDSFLA EIDELSDYEE SGFEDNVPNY GEDISMDMSD LETLKSDDDL DTVSKLLRTQ RYADVMNKVE DALGKDSCGA LSEDDPLYKL IVDCNKLTVD
101: IENEIVTVHG FIRSKYRPRF PELESLVHHA IEYASVVKQI GDEKDLTLVT LKGLSAKSTP LSVLLFASTT KGKPLPEGVL QKTLEACDRA FELDSALKKI
201: LAFVETKMGC IAPNLSAVVG SKVAAKLMAT AGGLSGLAKM PSCNVQVLGQ KRKNLDGFSA VTTQSRVGYL EQTEIFQNTP PGFKKQAIKL LAGKSTLAAR
301: VDACRGDPLG TNGKALREEI QKKIDKLQEP GVARQPKPLP VPDMTAKKKR GGRRLRKMKE RYAVTEMRKL SNRVAFGVAS EESSLGDGLG VGYGMLGQGG
401: SKRLRVSSVP SKLKLGAKLE KKLKERQYTS GVTTATTSGF MTSRLAFTPV QGIELCNPGA VKLGSGTQST YFSESGTFSQ IKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.