Factsheet for Bra040785.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63487	Canola	nucleus	100.0	100.0
Bra030816.1-P	Field mustard	nucleus	96.16	96.53
AT1G56110.1	Thale cress	nucleus	93.09	92.91
Bra001474.1-P	Field mustard	nucleus	85.8	88.51
Os07t0661800-01	Rice	nucleus	44.91	74.76
Bra033094.1-P	Field mustard	cytosol	62.0	72.58
GSMUA_Achr5P08210_001	Banana	nucleus	76.2	71.4
GSMUA_AchrUn_...	Banana	nucleus	75.82	70.79
Zm00001d029174_P005	Maize	nucleus	74.47	70.67
TraesCS2A01G125500.1	Wheat	nucleus	72.94	70.5
TraesCS2B01G148000.1	Wheat	nucleus	72.94	70.37
TraesCS2D01G128600.1	Wheat	nucleus	72.55	70.13
EER92268	Sorghum	nucleus	73.7	69.82
Os03t0352300-01	Rice	nucleus	73.9	69.75
TraesCS1D01G386500.1	Wheat	nucleus	72.55	68.98
TraesCS1A01G379300.1	Wheat	nucleus	72.55	68.98
TraesCS1B01G401000.1	Wheat	nucleus	72.55	68.85
HORVU2Hr1G022140.3	Barley	nucleus	72.36	67.32
Zm00001d047472_P002	Maize	plastid	73.51	67.31
EER97682	Sorghum	endoplasmic reticulum	72.55	66.9
HORVU1Hr1G083960.6	Barley	nucleus	71.59	66.25
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	27.64	64.0
HORVU2Hr1G022110.2	Barley	plastid	67.18	63.99
TraesCS2B01G147900.1	Wheat	plastid	56.05	63.07
TraesCS2D01G128500.1	Wheat	plastid	55.47	62.15
TraesCS2A01G125400.1	Wheat	cytosol, plastid	55.28	62.07
HORVU2Hr1G022120.1	Barley	mitochondrion	58.54	59.69
Bra020601.1-P	Field mustard	nucleus	39.35	42.01
Bra009978.1-P	Field mustard	nucleus	42.61	41.34
Bra036111.1-P	Field mustard	nucleus	41.46	40.3
Bra031522.1-P	Field mustard	nucleus	19.0	20.37
Bra026149.1-P	Field mustard	nucleus	17.47	18.8

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EnsemblPlantsGene:Bra040785	EnsemblPlants:Bra040785.1
EnsemblPlants:Bra040785.1-P	ncoils:Coil	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M4FI56
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000253E8E8
SEG:seg	:	:	:	:	:

Description

AT1G56110 (E=2e-241) NOP56 | NOP56 (Arabidopsis homolog of nucleolar protein Nop56)

Coordinates

chrScaffold000257:-:28313..30613

Molecular Weight (calculated)

58458.9 Da

IEP (calculated)

8.706

GRAVY (calculated)

-0.610

Length

521 amino acids

Sequence
(BLAST)

001: MAMYLLYESS SGYGLFEAHG LDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGTSE
101: PKLGSHILEA TKIPCQSNEF VLELLRGVRL HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVVEA GKASMGQDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVS KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVIEN LQNKDEEGEE AVEASGKKSK KKKAKGEEEE EAVDEEKSEK KKKKEKRKME TVEEKKKKKS KSAGGDEETD
501: DGHSKKKSKK KKKSKSEDDD E

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.