Factsheet for GSMUA_AchrUn_randomP13350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08210_001	Banana	nucleus	88.89	89.21
Os07t0661800-01	Rice	nucleus	46.77	83.39
EER92268	Sorghum	nucleus	78.85	80.0
Zm00001d029174_P005	Maize	nucleus	78.49	79.78
VIT_17s0000g01720.t01	Wine grape	nucleus	79.57	79.57
CDY08398	Canola	cytosol	3.41	79.17
Os03t0352300-01	Rice	nucleus	76.88	77.72
TraesCS1D01G386500.1	Wheat	nucleus	76.16	77.55
TraesCS1A01G379300.1	Wheat	nucleus	76.16	77.55
TraesCS2D01G128600.1	Wheat	nucleus	74.91	77.55
TraesCS1B01G401000.1	Wheat	nucleus	76.16	77.41
TraesCS2B01G148000.1	Wheat	nucleus	74.91	77.41
TraesCS2A01G125500.1	Wheat	nucleus	74.73	77.37
CDX98286	Canola	cytosol	18.64	77.04
Zm00001d047472_P002	Maize	plastid	78.14	76.63
CDY10510	Canola	nucleus	69.71	75.83
Bra040785.1-P	Field mustard	nucleus	70.79	75.82
CDY63487	Canola	nucleus	70.79	75.82
AT3G12860.1	Thale cress	nucleus	67.74	75.75
CDY59117	Canola	nucleus	69.89	75.73
CDY42406	Canola	nucleus	70.43	75.72
KRH48644	Soybean	nucleus	74.73	75.54
KRH57211	Soybean	nucleus	74.37	75.45
Bra030816.1-P	Field mustard	nucleus	70.07	75.34
HORVU2Hr1G022140.3	Barley	nucleus	75.45	75.18
Bra001474.1-P	Field mustard	nucleus	67.92	75.05
CDX82572	Canola	nucleus	67.92	75.05
KRH03927	Soybean	nucleus	73.84	75.05
HORVU1Hr1G083960.6	Barley	nucleus	75.63	74.96
CDY57300	Canola	nucleus	67.74	74.85
EER97682	Sorghum	endoplasmic reticulum	75.45	74.51
AT1G56110.1	Thale cress	nucleus	69.53	74.33
PGSC0003DMT400007150	Potato	nucleus	73.66	74.32
Solyc01g100570.2.1	Tomato	nucleus	73.48	74.14
HORVU2Hr1G022110.2	Barley	plastid	70.79	72.21
TraesCS2D01G128500.1	Wheat	plastid	58.42	70.11
TraesCS2B01G147900.1	Wheat	plastid	58.06	69.98
TraesCS2A01G125400.1	Wheat	cytosol, plastid	57.71	69.4
CDY04069	Canola	cytosol	52.69	65.92
HORVU2Hr1G022120.1	Barley	mitochondrion	60.04	65.56
CDY44398	Canola	cytosol	51.79	64.94
Bra033094.1-P	Field mustard	cytosol	51.79	64.94
CDY52879	Canola	nucleus	34.41	59.44
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	23.66	58.67
CDY08399	Canola	endoplasmic reticulum, plasma membrane	16.13	50.85
GSMUA_Achr11P...	Banana	cytosol	37.46	35.73
GSMUA_Achr8P09940_001	Banana	cytosol	37.1	35.2
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.59	17.68
GSMUA_Achr9P14550_001	Banana	plasma membrane	11.83	15.1

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EnsemblPlantsGene:GSMUA_AchrUn_randomG13350_001	EnsemblPlants:GSMUA_AchrUn_randomP13350_001
EnsemblPlants:GSMUA_AchrUn_randomT13350_001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M0U8U4	InterPro:NOP5_N
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI0002966D77	SEG:seg

Description

nucleolar protein 5A, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13350_001]

Coordinates

chrchrUn_random:+:64120551..64126295

Molecular Weight (calculated)

62598.8 Da

IEP (calculated)

9.089

GRAVY (calculated)

-0.575

Length

558 amino acids

Sequence
(BLAST)

001: MALFLLFESA SGYSLFHAYG LDEIGQNTEA VRNSVLDLTR FGKVVKLVAF HPFSSALDAL NQCNAVSEGL MTDELRNFLE MNLPKVKEGK KAKFSLGVAE
101: PKVGSQIFEV TKIPCQSNEF VLELLRGVRL HFDRFIKDLK PSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWYSWHF
201: PELMKIINDN YLYAKIAKSV ENKSDLTEDH IPELADIVGD EDKAKEIVEA AKASMGQDLS PIDLINVQQF AQRVINLSEY RKNLYEYLVT KMNDIAPNLA
301: SLIGEVVGAR LISHAGSLSN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR IARYLANKCS IASRIDCFSE VNTSIFGQKL
401: REQVEERLDF YDKGVAPRKN VDVMKAAIES TLNNTSQEDA DGLQKDEAST KKSKKKKSKR ENVDGESMAE DKSLEVAADG DAPIEPETEK RKKKKHKLEE
501: QQQEEVPPKV NGHDTEQNGT PKKNKKKKSH EDLDNDGDVQ MRSEGTKKKK KKVKAQGD

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.