CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08398	Canola	cytosol	4.33	58.33
CDX82572	Canola	nucleus	68.42	43.76
CDY57300	Canola	nucleus	68.42	43.76
AT3G12860.1	Thale cress	nucleus	65.63	42.48
CDY63487	Canola	nucleus	65.02	40.31
CDY59117	Canola	nucleus	63.78	40.0
CDY42406	Canola	nucleus	64.09	39.88
CDY10510	Canola	nucleus	63.16	39.77
CDX98286	Canola	cytosol	15.17	36.3
GSMUA_Achr5P08210_001	Banana	nucleus	60.37	35.07
CDY04069	Canola	cytosol	48.3	34.98
GSMUA_AchrUn_...	Banana	nucleus	59.44	34.41
CDY44398	Canola	cytosol	46.75	33.93
EER92268	Sorghum	nucleus	56.66	33.27
Zm00001d029174_P005	Maize	nucleus	56.35	33.15
Zm00001d047472_P002	Maize	plastid	57.59	32.69
Os03t0352300-01	Rice	nucleus	55.73	32.61
TraesCS2B01G148000.1	Wheat	nucleus	54.18	32.41
TraesCS2D01G128600.1	Wheat	nucleus	53.87	32.28
TraesCS2A01G125500.1	Wheat	nucleus	53.87	32.28
TraesCS1D01G386500.1	Wheat	nucleus	54.18	31.93
TraesCS1A01G379300.1	Wheat	nucleus	54.18	31.93
TraesCS1B01G401000.1	Wheat	nucleus	54.18	31.88
TraesCS2D01G128500.1	Wheat	plastid	44.89	31.18
HORVU1Hr1G083960.6	Barley	nucleus	53.87	30.91
HORVU2Hr1G022140.3	Barley	nucleus	53.56	30.89
TraesCS2B01G147900.1	Wheat	plastid	44.27	30.89
EER97682	Sorghum	endoplasmic reticulum	53.56	30.62
TraesCS2A01G125400.1	Wheat	cytosol, plastid	43.65	30.39
HORVU2Hr1G022110.2	Barley	plastid	51.39	30.35
HORVU2Hr1G022120.1	Barley	mitochondrion	44.89	28.38
Os07t0661800-01	Rice	nucleus	21.98	22.68
CDY08399	Canola	endoplasmic reticulum, plasma membrane	11.15	20.34
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	30.96	19.05
CDY52494	Canola	nucleus	30.03	18.27
CDX86179	Canola	nucleus	30.34	18.25
CDY00004	Canola	nucleus	30.03	18.1
CDX80674	Canola	cytosol	30.03	18.1
CDY19706	Canola	nucleus	29.72	17.94
CDY72546	Canola	nucleus	13.31	10.24
CDY39628	Canola	nucleus	13.93	9.87
CDY04340	Canola	plasma membrane	14.24	9.68
CDY24519	Canola	nucleus	14.24	9.47
CDY54131	Canola	mitochondrion	14.24	9.31
CDY36542	Canola	nucleus	11.76	9.07

Protein Annotations

EnsemblPlants:CDY52879	EnsemblPlantsGene:GSBRNA2T00008039001	Gene3D:1.10.246.90	InterPro:IPR002687	InterPro:Nop_dom	InterPro:Nop_dom_sf
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	PFAM:PF01798	PFscan:PS51358	ProteinID:CDY52879	ProteinID:CDY52879.1
SEG:seg	SUPFAM:SSF89124	UniParc:UPI0004EB8525	UniProt:A0A078ITV0	MapMan:35.1	:

Description

BnaCnng23670DBnaCnng23670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITV0]

Coordinates

chrLK033138:+:49558..51404

Molecular Weight (calculated)

36587.7 Da

IEP (calculated)

9.648

GRAVY (calculated)

-0.583

Length

323 amino acids

Sequence
(BLAST)

001: MVCDSQLWPS VATYDWVRKL AITLSAIAVD TLFFDPWTFG SVGSSSSLLS SFHPSESALN QINAVYLKIG SCIFEATKIP CQSNEFVHEL LRGVGQHFDR
101: FIKDLKIVND NYLYARVSKV IEDKSKLSEE HIPMLTDILG DEDKAKEILG AEKALFRALK TRGNTPKYGL IFHSSFIGRA SAKNKGRIAR YLANKCSVAS
201: RIDCFADSST TAFGEKLREQ VEERLEFYDK GVAPRKNVDV MKEVLESLEK KDEGEAIAVE ASEKNKKKDK RKTEEKDEGE DGEKSTKKKK SKTVEEELTS
301: HRRKRRRKLS HKVKNIPRQV SVM

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.