CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033094.1-P	Field mustard	cytosol	100.0	100.0
CDY04069	Canola	cytosol	93.03	92.83
CDY08398	Canola	cytosol	4.04	75.0
CDY57300	Canola	nucleus	73.93	65.15
CDX82572	Canola	nucleus	73.03	64.36
CDX98286	Canola	cytosol	19.33	63.7
Os07t0661800-01	Rice	nucleus	44.72	63.58
CDY10510	Canola	nucleus	72.81	63.16
CDY59117	Canola	nucleus	72.36	62.52
CDY42406	Canola	nucleus	72.36	62.04
CDY63487	Canola	nucleus	72.58	62.0
GSMUA_Achr5P08210_001	Banana	nucleus	65.84	52.7
TraesCS2A01G125400.1	Wheat	cytosol, plastid	54.38	52.16
TraesCS2B01G147900.1	Wheat	plastid	54.16	52.05
TraesCS2D01G128500.1	Wheat	plastid	54.38	52.04
GSMUA_AchrUn_...	Banana	nucleus	64.94	51.79
TraesCS2A01G125500.1	Wheat	nucleus	62.7	51.76
TraesCS2B01G148000.1	Wheat	nucleus	62.7	51.67
Zm00001d029174_P005	Maize	nucleus	63.6	51.55
EER92268	Sorghum	nucleus	63.6	51.45
TraesCS2D01G128600.1	Wheat	nucleus	62.25	51.39
Os03t0352300-01	Rice	nucleus	62.25	50.18
TraesCS1D01G386500.1	Wheat	nucleus	61.57	50.0
TraesCS1A01G379300.1	Wheat	nucleus	61.57	50.0
TraesCS1B01G401000.1	Wheat	nucleus	61.57	49.91
Zm00001d047472_P002	Maize	plastid	63.15	49.38
HORVU2Hr1G022140.3	Barley	nucleus	61.35	48.75
HORVU2Hr1G022120.1	Barley	mitochondrion	55.51	48.34
EER97682	Sorghum	endoplasmic reticulum	61.35	48.32
HORVU1Hr1G083960.6	Barley	nucleus	60.9	48.13
CDY52879	Canola	nucleus	33.93	46.75
CDY08399	Canola	endoplasmic reticulum, plasma membrane	18.2	45.76
HORVU2Hr1G022110.2	Barley	plastid	55.96	45.52
CDX86179	Canola	nucleus	40.22	33.33
CDY52494	Canola	nucleus	39.78	33.33
CDX80674	Canola	cytosol	40.0	33.21
CDY19706	Canola	nucleus	39.55	32.9
CDY00004	Canola	nucleus	39.55	32.84
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	38.43	32.57
CDY72546	Canola	nucleus	15.06	15.95
CDY24519	Canola	nucleus	16.63	15.23
CDY04340	Canola	plasma membrane	16.18	15.16
CDY54131	Canola	mitochondrion	16.4	14.78
CDY39628	Canola	nucleus	14.16	13.82
CDY36542	Canola	nucleus	12.36	13.13

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	UniProt:A0A078I5H1	EnsemblPlants:CDY44398
ProteinID:CDY44398	ProteinID:CDY44398.1	EnsemblPlantsGene:GSBRNA2T00080073001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI0002546E49
SEG:seg	:	:	:	:	:

Description

BnaA02g29790DBnaA02g29790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5H1]

Coordinates

chrLK032588:+:95222..97213

Molecular Weight (calculated)

49356.3 Da

IEP (calculated)

4.800

GRAVY (calculated)

-0.307

Length

445 amino acids

Sequence
(BLAST)

001: MAMFVLYESS SGYALFDVHG LNEIGQNVEA VQSSVSDLAR FGQVVKLTAF HPWQTAQDAL NQVNAVSEGF MSEELRSFLE LNLPKAEEGK ETKFSLGVSD
101: PKLGSCISEA TKIPCQSNEF VQELLRGVRQ HFDSFINDFK PGGLEKPQVG LALSYSRAKV KYNVNKEDHM VIQTISLLDT LDKDINSYAM RTREWYSPHF
201: PELDKIVNYD NYMYAQASKI IEDKSKLSEE HVTILTEVLG DEDKARELVE AGQASMGPDL SPLDLLHAQT FAQGVIDLTD YRKKLYDYLV VKVKDVAPNL
301: AALIGETVAA RLISHAGSLR NLAKHPSSTL QILGAERALR RALRTGGKTP KHGLIVHSSF IGRASARNKG RMARCLAAKC SIAARVDYFG DSSSADFGEK
401: LRVEVEERLD SLHNVYAMEE VLEDEEIVDA SGEEIDEEEA ADDVE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.