Factsheet for Os07t0661800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 18203134
nucleus: 23777608
nucleus: 26035336

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08398	Canola	cytosol	6.07	79.17
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	40.26	56.0
TraesCS2D01G128600.1	Wheat	nucleus	90.1	52.32
TraesCS2B01G148000.1	Wheat	nucleus	90.1	52.22
TraesCS2A01G125500.1	Wheat	nucleus	89.78	52.13
TraesCS1D01G386500.1	Wheat	nucleus	90.1	51.46
TraesCS1A01G379300.1	Wheat	nucleus	90.1	51.46
TraesCS1B01G401000.1	Wheat	nucleus	90.1	51.37
TraesCS2B01G147900.1	Wheat	plastid	74.76	50.54
TraesCS2D01G128500.1	Wheat	plastid	74.44	50.11
HORVU2Hr1G022140.3	Barley	nucleus	89.46	50.0
TraesCS2A01G125400.1	Wheat	cytosol, plastid	73.8	49.78
EER97682	Sorghum	endoplasmic reticulum	89.14	49.38
HORVU1Hr1G083960.6	Barley	nucleus	88.82	49.38
Os03t0352300-01	Rice	nucleus	86.26	48.91
CDY08399	Canola	endoplasmic reticulum, plasma membrane	27.16	48.02
HORVU2Hr1G022120.1	Barley	mitochondrion	77.96	47.75
GSMUA_AchrUn_...	Banana	nucleus	83.39	46.77
AT3G12860.1	Thale cress	nucleus	74.44	46.69
GSMUA_Achr5P08210_001	Banana	nucleus	82.43	46.4
VIT_17s0000g01720.t01	Wine grape	nucleus	82.11	46.06
CDY57300	Canola	nucleus	73.48	45.54
CDX82572	Canola	nucleus	73.48	45.54
Bra001474.1-P	Field mustard	nucleus	73.48	45.54
CDY10510	Canola	nucleus	74.44	45.42
CDY04069	Canola	cytosol	64.22	45.07
CDY59117	Canola	nucleus	74.12	45.05
Bra040785.1-P	Field mustard	nucleus	74.76	44.91
CDY63487	Canola	nucleus	74.76	44.91
KRH03927	Soybean	nucleus	78.59	44.81
KRH57211	Soybean	nucleus	78.59	44.73
Bra033094.1-P	Field mustard	cytosol	63.58	44.72
CDY44398	Canola	cytosol	63.58	44.72
CDY42406	Canola	nucleus	74.12	44.7
Bra030816.1-P	Field mustard	nucleus	73.8	44.51
HORVU2Hr1G022110.2	Barley	plastid	76.68	43.88
KRH48644	Soybean	nucleus	77.32	43.84
AT1G56110.1	Thale cress	nucleus	72.84	43.68
PGSC0003DMT400007150	Potato	nucleus	76.36	43.22
Solyc01g100570.2.1	Tomato	nucleus	75.4	42.68
CDX98286	Canola	cytosol	13.74	31.85
CDY52879	Canola	nucleus	22.68	21.98
Os03t0350300-01	Rice	nucleus	38.98	21.48
Os03t0350100-02	Rice	nucleus	38.98	21.48
Os04t0555400-01	Rice	nucleus	13.1	8.47
Os07t0141600-01	Rice	nucleus	12.46	8.06
Os02t0730100-00	Rice	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	ProteinID:BAC84317.1	ProteinID:BAF22455.1	ProteinID:BAT03063.1
GO:GO:0000154	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
EnsemblPlantsGene:Os07g0661800	EnsemblPlants:Os07t0661800-01	PFAM:PF01798	PFAM:PF08156	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0
UniProt:Q8H2U5	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI00001BF650	SEG:seg	:

Description

Similar to Nucleolar protein Nop56. (Os07t0661800-01)

Coordinates

chr7:+:27926158..27929980

Molecular Weight (calculated)

34883.0 Da

IEP (calculated)

5.434

GRAVY (calculated)

-0.079

Length

313 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYALFHAHG VDEIGQGVDA ARASVLELQR FSKAVKLAGF SPFSSAVDAL NQCNAISEGI MTDELRSFLE LNLPKVKEGK KAKYSVGVME
101: PKVGSHISEA TGIPCQCNEF VQELLRGVRL HFDHFIDQLK PTDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWYSWHF
201: PELVKIVNDN YVYSKIAKFV VNKSDLAEKD IPALADIIGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEIVGGL ELG

Best Arabidopsis Sequence Match ( AT3G12860.1 )
(BLAST)

001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE

Arabidopsis Description

NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.