Factsheet for GSMUA_Achr5P08210_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	89.21	88.89
Os07t0661800-01	Rice	nucleus	46.4	82.43
CDY08398	Canola	cytosol	3.42	79.17
VIT_17s0000g01720.t01	Wine grape	nucleus	79.32	79.03
EER92268	Sorghum	nucleus	76.98	77.82
Zm00001d029174_P005	Maize	nucleus	76.8	77.78
AT3G12860.1	Thale cress	nucleus	68.7	76.55
CDX98286	Canola	cytosol	18.53	76.3
CDY57300	Canola	nucleus	69.24	76.24
Bra040785.1-P	Field mustard	nucleus	71.4	76.2
CDY63487	Canola	nucleus	71.4	76.2
CDY59117	Canola	nucleus	70.5	76.12
CDX82572	Canola	nucleus	69.06	76.04
Bra001474.1-P	Field mustard	nucleus	69.06	76.04
CDY10510	Canola	nucleus	70.14	76.02
CDY42406	Canola	nucleus	70.86	75.92
Os03t0352300-01	Rice	nucleus	75.36	75.91
TraesCS2A01G125500.1	Wheat	nucleus	73.56	75.88
TraesCS2D01G128600.1	Wheat	nucleus	73.56	75.88
TraesCS2B01G148000.1	Wheat	nucleus	73.56	75.74
TraesCS1D01G386500.1	Wheat	nucleus	74.46	75.55
TraesCS1A01G379300.1	Wheat	nucleus	74.46	75.55
Bra030816.1-P	Field mustard	nucleus	70.5	75.53
TraesCS1B01G401000.1	Wheat	nucleus	74.46	75.41
PGSC0003DMT400007150	Potato	nucleus	74.64	75.05
Zm00001d047472_P002	Maize	plastid	76.62	74.87
AT1G56110.1	Thale cress	nucleus	70.14	74.71
Solyc01g100570.2.1	Tomato	nucleus	74.28	74.68
KRH48644	Soybean	nucleus	74.1	74.64
KRH57211	Soybean	nucleus	73.38	74.18
EER97682	Sorghum	endoplasmic reticulum	75.18	73.98
KRH03927	Soybean	nucleus	73.02	73.95
HORVU1Hr1G083960.6	Barley	nucleus	74.28	73.36
HORVU2Hr1G022140.3	Barley	nucleus	73.56	73.04
HORVU2Hr1G022110.2	Barley	plastid	69.06	70.2
TraesCS2D01G128500.1	Wheat	plastid	57.73	69.03
TraesCS2B01G147900.1	Wheat	plastid	57.01	68.47
TraesCS2A01G125400.1	Wheat	cytosol, plastid	56.65	67.89
CDY04069	Canola	cytosol	53.6	66.82
CDY44398	Canola	cytosol	52.7	65.84
Bra033094.1-P	Field mustard	cytosol	52.7	65.84
HORVU2Hr1G022120.1	Barley	mitochondrion	58.99	64.19
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	24.64	60.89
CDY52879	Canola	nucleus	35.07	60.37
CDY08399	Canola	endoplasmic reticulum, plasma membrane	16.55	51.98
GSMUA_Achr11P...	Banana	cytosol	38.13	36.24
GSMUA_Achr8P09940_001	Banana	cytosol	38.13	36.05
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.65	17.68
GSMUA_Achr9P14550_001	Banana	plasma membrane	11.69	14.87

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EnsemblPlantsGene:GSMUA_Achr5G08210_001	EnsemblPlants:GSMUA_Achr5P08210_001
EnsemblPlants:GSMUA_Achr5T08210_001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M0SWQ0	InterPro:NOP5_N
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000296104B	SEG:seg

Description

nucleolar protein 5A, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G08210_001]

Coordinates

chr5:+:5937001..5940695

Molecular Weight (calculated)

62199.3 Da

IEP (calculated)

8.938

GRAVY (calculated)

-0.532

Length

556 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYSLFHAYG LDEIGQNTEA VRNSVLDLTR FGKVVKLVAF HPFSSALDAL NQCNAVSEGL MTEELRNFLE MNLPKVKEGK KAKFSLGVAE
101: PKVGSQIFEV TKIPCQSNEF VLELLRGVRL HFDRFIKDLK PSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWYSWHF
201: PELVKIINDN YLYARVTKFV ENKSDLSEGH IPGLADIVGD EDKAKEIVEA AKASMGQDLS PIDLINVQQF AQRVINLSEY RKKLYEYLVT KMTDIAPNLA
301: SLIGEVVGAR LISHAGSLSN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASARNKGR IARYLANKCS IASRIDCFSE VNTSVFGQKL
401: REQVEERLDF YDKGVAPRKN VDVMKVAIES VLSNGSQEDD DGQQNGEISE KKGKNKKKSK GENVAAEPME EDRPPEVAAD EHASIEPETD KKKKKKKKQD
501: QEDEVVLSEV NAHDTEQNGT PKKKKKSRVD LDNDGDVQTG TEGKKKKKKK VKAQDD

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.