Factsheet for GSMUA_Achr9P14550_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	76.43	67.89
KRH07033	Soybean	nucleus	72.08	64.81
PGSC0003DMT400012169	Potato	nucleus	71.4	64.6
Solyc08g078430.2.1	Tomato	nucleus	71.4	64.6
Zm00001d002716_P002	Maize	nucleus	71.62	64.54
OQU82106	Sorghum	nucleus	71.4	64.46
KRG94405	Soybean	nucleus	71.62	64.4
Os07t0141600-01	Rice	nucleus	71.17	64.26
Os04t0555400-01	Rice	nucleus	70.94	64.05
TraesCS1A01G376100.1	Wheat	nucleus	68.88	62.06
TraesCS1D01G383400.2	Wheat	nucleus	68.88	62.06
TraesCS2B01G046400.1	Wheat	nucleus	67.51	61.97
VIT_01s0026g00230.t01	Wine grape	cytosol	71.62	61.49
Bra031522.1-P	Field mustard	nucleus	66.13	59.47
AT1G60170.1	Thale cress	nucleus	64.76	58.35
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.65	58.14
TraesCS2B01G267700.1	Wheat	cytosol	62.01	57.91
CDY72546	Canola	nucleus	55.61	57.86
CDY04340	Canola	plasma membrane	61.56	56.63
CDY24519	Canola	nucleus	62.7	56.38
CDY54131	Canola	mitochondrion	62.47	55.26
KXG30826	Sorghum	nucleus	53.55	53.55
Os02t0730100-00	Rice	extracellular	17.62	52.38
CDY39628	Canola	nucleus	52.17	50.0
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	52.17	49.57
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	51.03	49.23
Bra026149.1-P	Field mustard	nucleus	54.46	49.17
CDY36542	Canola	nucleus	47.14	49.16
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	50.11	48.03
AT1G70400.3	Thale cress	cytosol	23.8	37.96
GSMUA_Achr11P...	Banana	cytosol	16.93	12.65
GSMUA_Achr8P09940_001	Banana	cytosol	16.93	12.59
GSMUA_AchrUn_...	Banana	nucleus	15.1	11.83
GSMUA_Achr5P08210_001	Banana	nucleus	14.87	11.69

Protein Annotations

Gene3D:1.10.246.90	MapMan:35.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0046540	EnsemblPlantsGene:GSMUA_Achr9G14550_001	EnsemblPlants:GSMUA_Achr9P14550_001
EnsemblPlants:GSMUA_Achr9T14550_001	InterPro:IPR002687	UniProt:M0U0B3	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31
InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124	TMHMM:TMhelix	UniParc:UPI000294E38A	SEG:seg

Description

Putative U4/U6 small nuclear ribonucleoprotein Prp31 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14550_001]

Coordinates

chr9:+:9493368..9501897

Molecular Weight (calculated)

48418.1 Da

IEP (calculated)

5.243

GRAVY (calculated)

-0.252

Length

437 amino acids

Sequence
(BLAST)

001: MDSGQLCTCS FVVNLLISEE QMARLADSFL ADLDELSDNE VQLDDENIDA AAVEEDDEGD MLDIETLNYE DLDSVSKLQK TQRYNDIMQK GTDISSHGIV
101: LEDDPEYQVI IDCNSLSVYI KNEIIIIHNF IRDKYRLKFP ELESLVHHQI DYARVVKKIG NEMYLTLVDL ECLLPSAIIM VVSVTASTTI LYFVESIMGY
201: IAPNLSAIVG SAVAAKLMGT AGGLLALAKM PASRVDSTRG DPTGNTGIDL REEIGKRIEK WQEPPRAKQP KPLPVPYSEP KKKRGGRRLR KIKERYAITD
301: MRKLANRMQF GVPEENSLGD GLGEGYGMLG QAGSGKLRVS IGQSKLATKA AKRFKEKHFG SSGAASGSTS SDIYTRTSEY ICNINWFKLF TIFISSILCV
401: HQGIELTNPQ AYGTQLGSGT QSIYFSETGT FSKIKRM

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.