Factsheet for TraesCS1D01G383400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G376100.1	Wheat	nucleus	100.0	100.0
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.18	93.22
TraesCS2D01G254900.1	Wheat	cytosol	23.71	92.74
Os07t0141600-01	Rice	nucleus	90.31	90.5
Zm00001d002716_P002	Maize	nucleus	89.9	89.9
OQU82106	Sorghum	nucleus	89.69	89.88
Os04t0555400-01	Rice	nucleus	89.48	89.67
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	85.15	83.94
Solyc08g078430.2.1	Tomato	nucleus	81.65	81.99
PGSC0003DMT400012169	Potato	nucleus	81.65	81.99
KRG94405	Soybean	nucleus	82.06	81.89
KRH07033	Soybean	nucleus	82.06	81.89
CDY72546	Canola	nucleus	67.22	77.62
VIT_01s0026g00230.t01	Wine grape	cytosol	81.24	77.41
Bra031522.1-P	Field mustard	nucleus	75.88	75.72
CDY04340	Canola	plasma membrane	72.78	74.32
AT1G60170.1	Thale cress	nucleus	74.23	74.23
CDY24519	Canola	nucleus	72.58	72.43
CDY54131	Canola	mitochondrion	72.58	71.26
GSMUA_Achr9P14550_001	Banana	plasma membrane	62.06	68.88
CDY39628	Canola	nucleus	61.44	65.35
CDY36542	Canola	nucleus	56.29	65.16
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	60.41	64.68
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	61.03	64.35
Bra026149.1-P	Field mustard	nucleus	63.92	64.05
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	60.0	63.82
AT1G70400.3	Thale cress	cytosol	27.63	48.91
TraesCS2D01G120400.1	Wheat	nucleus	20.41	17.68
TraesCS2D01G128600.1	Wheat	nucleus	17.94	16.14
TraesCS1D01G386500.1	Wheat	nucleus	18.14	16.06
TraesCS2D01G128500.1	Wheat	plastid	15.26	15.91

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:GO:0000244	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931
SUPFAM:SSF89124	EnsemblPlantsGene:TraesCS1D01G383400	EnsemblPlants:TraesCS1D01G383400.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:457972420..457976073

Molecular Weight (calculated)

52597.9 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.350

Length

485 amino acids

Sequence
(BLAST)

001: MASLADSFLA DLDELSDNEA YPEEDNAEAV GMDEDGDDDM PDLESLNYDD LDSVSKLQKT QRYSDIMQKV EGALEKDTYL SNQGFILEED PEYQLIVDCN
101: ALSVDIENEL IIIHNFIRDK YRLKFPELES LVHHPIDYAR VVKKIANEVD ITLVDLEGLL PSAVIMVVSV TASTTSGKPL SQENLVKTIE ACDRALNLDA
201: AKKKVLDFVE GKMGYIAPNL SAIVGSAVAA KLMGIAGGLG ALAKMPACNV QLLGAKKKNL AGFSSATSQF RVGYLEQAEV FQSTPPALRT RACRVIAAKA
301: TLAARIDSTR GDPTGKAGRN LLEEIRKKIE KWQEPPPAKL PKPLPVPDSE PKKKRGGRRL RKMKERYAVT DMMKLANRMQ FGIPEESSLG DGLGEGYGML
401: GQAGSGKLRV SAAQNKLAAK VAKKFKERSY GSGGATSGLT SSLAFTPVQG IELSNPHAHG NHLGSGTQST YFSETGTFSR INNRP

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.