Factsheet for GSMUA_Achr3P06150_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078430.2.1	Tomato	nucleus	85.98	87.58
PGSC0003DMT400012169	Potato	nucleus	85.77	87.37
Os07t0141600-01	Rice	nucleus	85.37	86.78
KRH07033	Soybean	nucleus	85.37	86.42
KRG94405	Soybean	nucleus	85.37	86.42
Zm00001d002716_P002	Maize	nucleus	85.16	86.39
Os04t0555400-01	Rice	nucleus	84.96	86.36
OQU82106	Sorghum	nucleus	84.76	86.16
TraesCS1D01G383400.2	Wheat	nucleus	83.94	85.15
TraesCS1A01G376100.1	Wheat	nucleus	83.94	85.15
TraesCS2B01G046400.1	Wheat	nucleus	82.32	85.08
VIT_01s0026g00230.t01	Wine grape	cytosol	85.98	83.1
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.74	79.84
CDY72546	Canola	nucleus	68.09	79.76
Bra031522.1-P	Field mustard	nucleus	77.44	78.4
TraesCS2B01G267700.1	Wheat	cytosol	73.98	77.78
AT1G60170.1	Thale cress	nucleus	76.22	77.32
GSMUA_Achr9P14550_001	Banana	plasma membrane	67.89	76.43
CDY04340	Canola	plasma membrane	73.78	76.42
CDY24519	Canola	nucleus	74.19	75.1
CDY54131	Canola	mitochondrion	74.19	73.89
KXG30826	Sorghum	nucleus	61.99	69.79
CDY39628	Canola	nucleus	60.98	65.79
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	61.38	65.65
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	60.37	65.56
CDY36542	Canola	nucleus	55.69	65.39
Bra026149.1-P	Field mustard	nucleus	64.23	65.29
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	60.16	64.91
Os02t0730100-00	Rice	extracellular	17.68	59.18
AT1G70400.3	Thale cress	cytosol	28.46	51.09
GSMUA_Achr8P09940_001	Banana	cytosol	19.51	16.33
GSMUA_Achr11P...	Banana	cytosol	19.31	16.24
GSMUA_Achr5P08210_001	Banana	nucleus	17.68	15.65
GSMUA_AchrUn_...	Banana	nucleus	17.68	15.59

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:GO:0000244	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	EnsemblPlantsGene:GSMUA_Achr3G06150_001	EnsemblPlants:GSMUA_Achr3P06150_001
EnsemblPlants:GSMUA_Achr3T06150_001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M0SC82	InterPro:NOSIC
InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904
PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000295AA5A
SEG:seg	:	:	:	:	:

Description

Putative U4/U6 small nuclear ribonucleoprotein Prp31 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06150_001]

Coordinates

chr3:+:4168148..4174880

Molecular Weight (calculated)

53739.3 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.372

Length

492 amino acids

Sequence
(BLAST)

001: MHSFRCIHFA SLADSFLADL DELSDNEAHP DDEDLDAAAM EEDVDGDMPD IETLNYDDLD SVSKLQKTQR YNDIMQKVDD ALEKGTDISS HGIVLEDDPE
101: YQLIVDCNAL SVDIENEIII IHNFIRDKYR LKFPELESLV HHPIDYARVV KKIGNEVDLT LVDLDGLLPS AIIMVVSVTA STTSGKPLSE ESLQKTIDAC
201: DRALALDLAK KKVLDFVESR MGYIAPNLSA IAGTAVAAKL MGTAGGLSAL AKMPACNVQL LGSKKKTLAG FSTATSQFRV GYLEQTEIFQ STPPSLRTRA
301: CRLLAAKSTL AARVDSIRGD PTGKTGRDLR EEIRKKIEKW QEPPPAKQPK PLPVPDSEPK KKRGGRRLRK MKERYAVTDM RKLANRMQFG IPEESSLGDG
401: LGEGYGMLGQ AGSGKLRVSL AQSKLAAKVA KRFKEKQYGS SGATSGLTSS LAFTPVQGIE LSNPQAHGNQ LGSGIQSTYF SETGTFSKIK RM

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.