CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82106	Sorghum	nucleus	74.83	67.56
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	69.79	61.99
Solyc08g078430.2.1	Tomato	nucleus	68.19	61.7
PGSC0003DMT400012169	Potato	nucleus	68.19	61.7
KRG94405	Soybean	nucleus	68.19	61.32
KRH07033	Soybean	nucleus	68.19	61.32
CDY72546	Canola	nucleus	56.98	59.29
VIT_01s0026g00230.t01	Wine grape	cytosol	68.19	58.55
Bra031522.1-P	Field mustard	nucleus	63.16	56.79
AT1G60170.1	Thale cress	nucleus	62.7	56.49
CDY04340	Canola	plasma membrane	60.18	55.37
Os02t0730100-00	Rice	extracellular	18.31	54.42
CDY24519	Canola	nucleus	60.41	54.32
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	56.29	54.3
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	56.52	53.7
GSMUA_Achr9P14550_001	Banana	plasma membrane	53.55	53.55
CDY54131	Canola	mitochondrion	60.18	53.24
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	54.92	52.63
CDY39628	Canola	nucleus	51.95	49.78
CDY36542	Canola	nucleus	47.6	49.64
Bra026149.1-P	Field mustard	nucleus	54.92	49.59
AT1G70400.3	Thale cress	cytosol	25.17	40.15
EER92268	Sorghum	nucleus	20.37	16.18
KXG39385	Sorghum	cytosol	19.45	14.94
KXG34017	Sorghum	cytosol	18.76	14.44
EER97682	Sorghum	endoplasmic reticulum	18.08	13.98

Protein Annotations

Gene3D:1.10.246.90	MapMan:16.4.1.3.3	UniProt:A0A194YRL1	ncoils:Coil	GO:GO:0000244	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	InterPro:IPR002687	EnsemblPlants:KXG30826
ProteinID:KXG30826	ProteinID:KXG30826.1	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798
PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C
SMART:SM00931	EnsemblPlantsGene:SORBI_3004G250800	SUPFAM:SSF89124	UniParc:UPI0007F21B84	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:59715314..59719347

Molecular Weight (calculated)

48142.4 Da

IEP (calculated)

9.756

GRAVY (calculated)

-0.332

Length

437 amino acids

Sequence
(BLAST)

001: MVDLDELSDR EDYPDADDNV PDLKSLDLDS VSKLQKIQRY KDIMQKVEDA LERGISDSNQ GAILEDQEYQ LVVDCNALSI DIDNEITIIH NFIRYKFKLK
101: HPLLESRVHH PIDYARVVWK IGNEMDLTLV DLKGILPSAD IMWITMAEST TSGEPLSEDN LKMLLEFLKR RMGYIAPNLA AIVGSAVAPK LMSRAGGLGA
201: LAKMPACNVL LLGAKKTNLS GFSTASMQSR IGYLEQTEVF QSRPPSLRPQ ASRLIAAKAT IAARIDSIRG DPTRIAAKNL LEEISKKIEK WQQLPPARLP
301: KPLPIPDSMP KKKRGGRRLR KMKERYAQTN TMKLVSQMKF GVPEESTLGD GLGKGYGLLG QAGRGNLLVS AGQSKLCTKI AKRQKSSESS GSRLGLTSSF
401: AFTPVQGIEL SNPFAKGGDI TDSTYFSDTG TFSKIKV

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.