CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72546	Canola	nucleus	82.39	96.9
CDY24519	Canola	nucleus	94.33	95.88
Bra031522.1-P	Field mustard	nucleus	92.92	94.44
CDY04340	Canola	plasma membrane	90.69	94.32
AT1G60170.1	Thale cress	nucleus	85.83	87.42
KRH07033	Soybean	nucleus	75.1	76.34
KRG94405	Soybean	nucleus	74.9	76.13
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.89	74.19
OQU82106	Sorghum	nucleus	72.47	73.97
Zm00001d002716_P002	Maize	nucleus	72.27	73.61
Os04t0555400-01	Rice	nucleus	71.86	73.35
Os07t0141600-01	Rice	nucleus	71.86	73.35
TraesCS1D01G383400.2	Wheat	nucleus	71.26	72.58
TraesCS1A01G376100.1	Wheat	nucleus	71.26	72.58
TraesCS2B01G046400.1	Wheat	nucleus	69.64	72.27
VIT_01s0026g00230.t01	Wine grape	cytosol	71.66	69.55
CDY36542	Canola	nucleus	57.89	68.26
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.05	68.02
CDY39628	Canola	nucleus	62.35	67.54
TraesCS2B01G267700.1	Wheat	cytosol	61.34	64.74
GSMUA_Achr9P14550_001	Banana	plasma membrane	55.26	62.47
KXG30826	Sorghum	nucleus	53.24	60.18
Os02t0730100-00	Rice	extracellular	14.98	50.34
CDX98286	Canola	cytosol	7.29	26.67
CDX86179	Canola	nucleus	20.04	18.44
CDX80674	Canola	cytosol	19.84	18.28
CDY10510	Canola	nucleus	18.62	17.93
CDY52494	Canola	nucleus	19.23	17.89
CDY63487	Canola	nucleus	18.83	17.85
CDY42406	Canola	nucleus	18.62	17.73
CDY59117	Canola	nucleus	18.42	17.67
CDY19706	Canola	nucleus	19.03	17.57
CDY00004	Canola	nucleus	19.03	17.54
CDY57300	Canola	nucleus	17.81	17.43
CDX82572	Canola	nucleus	17.61	17.23
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	18.22	17.14
CDY44398	Canola	cytosol	14.78	16.4
CDY04069	Canola	cytosol	14.57	16.14
CDY52879	Canola	nucleus	9.31	14.24
CDY08398	Canola	cytosol	0.61	12.5
CDY08399	Canola	endoplasmic reticulum, plasma membrane	2.23	6.21

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:A0A078IVW0	UniProt:A0A078IVW0
EnsemblPlants:CDY54131	ProteinID:CDY54131	ProteinID:CDY54131.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	EnsemblPlantsGene:GSBRNA2T00013418001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931
SUPFAM:SSF89124	UniParc:UPI0004EF23C7	SEG:seg	:	:	:

Description

BnaC01g43100DBnaC01g43100D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078IVW0]

Coordinates

chrLK033282:+:3..7967

Molecular Weight (calculated)

53943.7 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.395

Length

494 amino acids

Sequence
(BLAST)

001: AMLCQNLTRK IKRERPAVKR GGPSFSFRVE DMATLEDSFL ADLDDLSDNE AELDESDGDG AKKDEEDIDM DMADLETLNY DDLDSVSKLQ ISQRYLDIMQ
101: KVEEALGKES DGTEKGTVLE DDPEYKLIVD CNQLSVDIEN EIAIVHNFIR DKYRLKFQEL ESLVNHPIDY ARVVKKIGNE TDLTLVDLEG LLPSAIIMVV
201: SVTALTTKGS PLPEDVLQKT LEACDRALEL DSARKKVLDF VESKMGSIAP NLSAIVGSAV AAKLMGTAGG LSALAKMPAC NVQVLGHKRK NLAGFSSATS
301: QLRVGYLEQT EIFQSTPPAL KSRAGRILAA KSTLAARIEK WQEPPPARQP KPLPVPDSEP KKRRGGRRLR KMKERYAVTD MRKLANRMAF GTPEESSLGD
401: GLGEGYGMLG QAGSNRLRIS SVPSKLKINP TIAKKLKERN YAGGATTSGL TSSLAFTPVQ GIELCNPQQV LGLGSGTQST YFSESGTFSK LKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.