CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63487	Canola	nucleus	97.86	96.74
CDY10510	Canola	nucleus	95.73	96.1
CDY42406	Canola	nucleus	96.7	95.95
CDY08398	Canola	cytosol	4.27	91.67
AT1G56110.1	Thale cress	nucleus	92.82	91.57
CDY57300	Canola	nucleus	86.6	88.32
CDX82572	Canola	nucleus	86.02	87.72
CDX98286	Canola	cytosol	21.94	83.7
Os07t0661800-01	Rice	nucleus	45.05	74.12
CDY04069	Canola	cytosol	63.3	73.09
CDY44398	Canola	cytosol	62.52	72.36
GSMUA_Achr5P08210_001	Banana	nucleus	76.12	70.5
Zm00001d029174_P005	Maize	nucleus	74.76	70.13
TraesCS2A01G125500.1	Wheat	nucleus	73.2	69.94
GSMUA_AchrUn_...	Banana	nucleus	75.73	69.89
TraesCS2B01G148000.1	Wheat	nucleus	73.2	69.81
TraesCS2D01G128600.1	Wheat	nucleus	72.82	69.57
EER92268	Sorghum	nucleus	74.17	69.45
Os03t0352300-01	Rice	nucleus	74.37	69.38
TraesCS1D01G386500.1	Wheat	nucleus	73.4	68.98
TraesCS1A01G379300.1	Wheat	nucleus	73.4	68.98
TraesCS1B01G401000.1	Wheat	nucleus	73.4	68.85
Zm00001d047472_P002	Maize	plastid	73.98	66.96
HORVU2Hr1G022140.3	Barley	nucleus	72.62	66.79
EER97682	Sorghum	endoplasmic reticulum	72.62	66.19
HORVU1Hr1G083960.6	Barley	nucleus	72.23	66.07
CDY52879	Canola	nucleus	40.0	63.78
HORVU2Hr1G022110.2	Barley	plastid	67.57	63.62
TraesCS2B01G147900.1	Wheat	plastid	56.12	62.42
TraesCS2D01G128500.1	Wheat	plastid	55.73	61.72
TraesCS2A01G125400.1	Wheat	cytosol, plastid	55.34	61.42
HORVU2Hr1G022120.1	Barley	mitochondrion	58.84	59.3
CDY08399	Canola	endoplasmic reticulum, plasma membrane	17.67	51.41
CDY52494	Canola	nucleus	43.11	41.81
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	42.33	41.52
CDX86179	Canola	nucleus	42.52	40.78
CDX80674	Canola	cytosol	42.33	40.67
CDY19706	Canola	nucleus	41.75	40.19
CDY00004	Canola	nucleus	41.75	40.11
CDY72546	Canola	nucleus	16.31	20.0
CDY04340	Canola	plasma membrane	17.48	18.95
CDY24519	Canola	nucleus	17.86	18.93
CDY54131	Canola	mitochondrion	17.67	18.42
CDY39628	Canola	nucleus	15.15	17.11
CDY36542	Canola	nucleus	13.4	16.47

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	UniProt:A0A078J4T8	EnsemblPlants:CDY59117
ProteinID:CDY59117	ProteinID:CDY59117.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00025574001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798
PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI0004EF27D4	SEG:seg	:	:	:	:

Description

BnaCnng34340DBnaCnng34340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4T8]

Coordinates

chrLK033727:-:32171..34599

Molecular Weight (calculated)

57878.3 Da

IEP (calculated)

9.294

GRAVY (calculated)

-0.610

Length

515 amino acids

Sequence
(BLAST)

001: MAMYLLYESS SGYGLFEAHG LDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVREGK KPKFSLGTSE
101: PKLGSHILEA TKIPCQSNEF VLELLRGVRL HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVVEA GKASMGQDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVS KMSDIAPNLA
301: ALIGDMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVIEN LQNKDEENKE TVDASAKKSK KKKAKGEKEE EVEKSEKKKK RKMETEEEKK KKKSKSAGGD EETDDGQSKK
501: KSKKKKKSKS EDDDE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.