Factsheet for HORVU2Hr1G022140.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G128600.1	Wheat	nucleus	93.93	97.59
TraesCS2B01G148000.1	Wheat	nucleus	93.75	97.22
TraesCS2A01G125500.1	Wheat	nucleus	93.39	97.03
HORVU1Hr1G083960.6	Barley	nucleus	90.71	90.23
Os07t0661800-01	Rice	nucleus	50.0	89.46
HORVU2Hr1G022110.2	Barley	plastid	83.04	85.01
EER97682	Sorghum	endoplasmic reticulum	82.32	81.59
GSMUA_AchrUn_...	Banana	nucleus	75.18	75.45
HORVU2Hr1G022120.1	Barley	mitochondrion	68.75	75.34
CDY08398	Canola	cytosol	3.21	75.0
CDX98286	Canola	cytosol	17.86	74.07
GSMUA_Achr5P08210_001	Banana	nucleus	73.04	73.56
VIT_17s0000g01720.t01	Wine grape	nucleus	73.04	73.3
CDY10510	Canola	nucleus	66.61	72.71
CDY59117	Canola	nucleus	66.79	72.62
CDY63487	Canola	nucleus	67.32	72.36
Bra040785.1-P	Field mustard	nucleus	67.32	72.36
AT3G12860.1	Thale cress	nucleus	64.29	72.14
CDY42406	Canola	nucleus	66.79	72.06
Bra030816.1-P	Field mustard	nucleus	66.43	71.68
CDX82572	Canola	nucleus	64.11	71.09
Bra001474.1-P	Field mustard	nucleus	64.11	71.09
CDY57300	Canola	nucleus	63.93	70.89
AT1G56110.1	Thale cress	nucleus	65.89	70.69
KRH57211	Soybean	nucleus	69.29	70.55
PGSC0003DMT400007150	Potato	nucleus	69.64	70.52
KRH03927	Soybean	nucleus	68.93	70.31
Solyc01g100570.2.1	Tomato	nucleus	69.11	69.98
KRH48644	Soybean	nucleus	68.39	69.38
CDY04069	Canola	cytosol	49.46	62.11
CDY44398	Canola	cytosol	48.75	61.35
Bra033094.1-P	Field mustard	cytosol	48.75	61.35
CDY52879	Canola	nucleus	30.89	53.56
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	21.43	53.33
CDY08399	Canola	endoplasmic reticulum, plasma membrane	14.11	44.63
HORVU4Hr1G041810.4	Barley	cytosol	36.07	37.2
HORVU2Hr1G020690.6	Barley	cytosol	34.82	36.11

Protein Annotations

EnsemblPlants:HORVU2Hr1G022140.3	EnsemblPlantsGene:HORVU2Hr1G022140	Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	SEG:seg
SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000B4814B7	UniProt:A0A287HC21	MapMan:17.1.1.2.1.5.2	:

Description

No Description!

Coordinates

chrchr2H:+:63970700..63976287

Molecular Weight (calculated)

62292.4 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.565

Length

560 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYALFHAYG IDEIGQSVDA VRSTVLDLQR FSKAVKLAGF TPFLSAVDAL NQCNAISEGI MTDELRNFLE LNLPKVKEGK KAKFRVGVME
101: PKVGSHITEA TGIPCESNDY IQELLRAVRL HFDQFIEQLK PSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDVNSFSM RVREWYGWHF
201: PELVKIVNDN YLYAKLAKFV VNKSDLSEKD IPALADLIGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEMVGAR LISHAGSLSN LAKCPASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSD MSSSIFGEKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIDG LTNTEDDDGK ENGDASVKKS KKKKSKAEAN GDAMDVDSAA AEAETGTEKK KKKHKLEEPQ DEEMQANGDD
501: ETPKKKKKKN RDAESVDPKT GTEGKSKKKK KKSKTEVCSK DDCDTKKKTP TIQDAPSKNT

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.