Factsheet for PGSC0003DMT400007150

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100570.2.1	Tomato	nucleus	98.19	98.19
VIT_17s0000g01720.t01	Wine grape	nucleus	81.19	80.47
KRH57211	Soybean	nucleus	78.12	78.55
KRH03927	Soybean	nucleus	77.76	78.32
KRH48644	Soybean	nucleus	77.22	77.36
AT3G12860.1	Thale cress	nucleus	69.08	76.55
Os07t0661800-01	Rice	nucleus	43.22	76.36
AT1G56110.1	Thale cress	nucleus	71.79	76.05
GSMUA_Achr5P08210_001	Banana	nucleus	75.05	74.64
EER92268	Sorghum	nucleus	73.42	73.82
GSMUA_AchrUn_...	Banana	nucleus	74.32	73.66
Zm00001d029174_P005	Maize	nucleus	73.06	73.59
TraesCS2B01G148000.1	Wheat	nucleus	71.43	73.15
TraesCS2D01G128600.1	Wheat	nucleus	70.89	72.73
TraesCS2A01G125500.1	Wheat	nucleus	70.71	72.54
Os03t0352300-01	Rice	nucleus	71.97	72.1
TraesCS1D01G386500.1	Wheat	nucleus	71.25	71.9
TraesCS1A01G379300.1	Wheat	nucleus	71.25	71.9
TraesCS1B01G401000.1	Wheat	nucleus	71.25	71.77
Zm00001d047472_P002	Maize	plastid	72.88	70.83
HORVU2Hr1G022140.3	Barley	nucleus	70.52	69.64
HORVU1Hr1G083960.6	Barley	nucleus	70.89	69.63
EER97682	Sorghum	endoplasmic reticulum	70.34	68.85
HORVU2Hr1G022110.2	Barley	plastid	66.18	66.91
TraesCS2D01G128500.1	Wheat	plastid	55.88	66.45
TraesCS2B01G147900.1	Wheat	plastid	55.15	65.87
TraesCS2A01G125400.1	Wheat	cytosol, plastid	54.97	65.52
HORVU2Hr1G022120.1	Barley	mitochondrion	57.32	62.04
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	22.6	55.56
CDY08399	Canola	endoplasmic reticulum, plasma membrane	14.65	45.76
PGSC0003DMT400060016	Potato	cytosol	40.14	41.04
PGSC0003DMT400015638	Potato	cytosol	39.24	39.6
PGSC0003DMT400012169	Potato	nucleus	15.37	17.6
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	13.92	16.89
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	13.92	16.74

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:102580709	MapMan:17.1.1.2.1.5.2	ncoils:Coil
InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M0ZSJ5	InterPro:NOP5_N	InterPro:NOSIC
InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	EnsemblPlantsGene:PGSC0003DMG400002765	PGSC:PGSC0003DMG400002765
EnsemblPlants:PGSC0003DMT400007150	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI000295EC2F	RefSeq:XP_006344769.1	SEG:seg	:	:	:

Description

Nucleolar protein nop56 [Source:PGSC_GENE;Acc:PGSC0003DMG400002765]

Coordinates

chr1:-:78215973..78219991

Molecular Weight (calculated)

62303.5 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.606

Length

553 amino acids

Sequence
(BLAST)

001: MALYLLYESA SGYGLFLAHG IDEIGQNTEA VRNSITDLNR FGKVVKLEAF NPFESALDAL NQCNAVSEGQ MTEELQNFLE RSLPKVKEGK KAKFSLGLAE
101: PKLGSHIHEV TKIPCQSNEF VLEILRGVRL HFEKFIENLK HGDLEKAQLG LSHSYSRAKV KFNVNRVDNM VTQAIVLLDT LDKDINTFSM RVREWYSWHF
201: PELVKIVNDN YLYAKVAKFV DDKSQLSEDK ISALTEIVGD EDKAKEIVEA AKASMGQDLS PVDLINVKLF AQRVMDLVEY RKNLYDYLVA KMHDIAPNLA
301: ALIGEVVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTKGNTPK YGLIFHSSFI GRASARNKGR MARYLANKCS IASRLDCFLD KSTTTFGEKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIET VEDKDTEMDV DELSTKKSKK KKSKVDVVEY AQPMIEDKPL ETNGDASEEP KSEKKKKKKE KRKSEQEAEH
501: EEDQTVDNGN GVHEDGTAKK KKKKKNKEDN GEELQAAVEI KKKKKKSKVQ DDE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.