Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57300 | Canola | nucleus | 92.99 | 91.88 |
| CDX82572 | Canola | nucleus | 92.59 | 91.49 |
| Bra001474.1-P | Field mustard | nucleus | 92.38 | 91.29 |
| AT1G56110.1 | Thale cress | nucleus | 87.17 | 83.33 |
| CDY08398 | Canola | cytosol | 4.01 | 83.33 |
| Os07t0661800-01 | Rice | nucleus | 46.69 | 74.44 |
| VIT_17s0000g01720.t01 | Wine grape | nucleus | 79.96 | 71.51 |
| KRH57211 | Soybean | nucleus | 76.95 | 69.82 |
| KRH03927 | Soybean | nucleus | 76.15 | 69.22 |
| PGSC0003DMT400007150 | Potato | nucleus | 76.55 | 69.08 |
| Solyc01g100570.2.1 | Tomato | nucleus | 76.55 | 69.08 |
| GSMUA_Achr5P08210_001 | Banana | nucleus | 76.55 | 68.7 |
| KRH48644 | Soybean | nucleus | 75.95 | 68.66 |
| TraesCS2A01G125500.1 | Wheat | nucleus | 73.35 | 67.9 |
| Zm00001d029174_P005 | Maize | nucleus | 74.55 | 67.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 75.75 | 67.74 |
| EER92268 | Sorghum | nucleus | 74.55 | 67.64 |
| TraesCS2B01G148000.1 | Wheat | nucleus | 73.15 | 67.59 |
| TraesCS2D01G128600.1 | Wheat | nucleus | 72.55 | 67.16 |
| TraesCS1D01G386500.1 | Wheat | nucleus | 72.34 | 65.88 |
| TraesCS1A01G379300.1 | Wheat | nucleus | 72.34 | 65.88 |
| Os03t0352300-01 | Rice | nucleus | 72.75 | 65.76 |
| TraesCS1B01G401000.1 | Wheat | nucleus | 72.34 | 65.76 |
| CDY52879 | Canola | nucleus | 42.48 | 65.63 |
| Zm00001d047472_P002 | Maize | plastid | 74.15 | 65.03 |
| HORVU2Hr1G022140.3 | Barley | nucleus | 72.14 | 64.29 |
| HORVU1Hr1G083960.6 | Barley | nucleus | 71.54 | 63.41 |
| EER97682 | Sorghum | endoplasmic reticulum | 71.54 | 63.19 |
| TraesCS2B01G147900.1 | Wheat | plastid | 56.91 | 61.34 |
| HORVU2Hr1G022110.2 | Barley | plastid | 67.13 | 61.24 |
| TraesCS2D01G128500.1 | Wheat | plastid | 56.51 | 60.65 |
| TraesCS2A01G125400.1 | Wheat | cytosol, plastid | 56.11 | 60.34 |
| HORVU2Hr1G022120.1 | Barley | mitochondrion | 59.92 | 58.51 |
| AT5G27120.1 | Thale cress | cytosol | 41.48 | 38.84 |
| AT3G05060.1 | Thale cress | cytosol | 41.08 | 38.46 |
| AT5G27140.2 | Thale cress | cytosol | 32.46 | 36.0 |
| AT1G60170.1 | Thale cress | nucleus | 16.63 | 17.11 |
| AT1G70400.3 | Thale cress | cytosol | 8.62 | 15.69 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | MapMan:17.1.1.2.1.5.2 | EntrezGene:820468 | UniProt:A0A178VKP5 |
| ProteinID:AEE75254.1 | ArrayExpress:AT3G12860 | EnsemblPlantsGene:AT3G12860 | RefSeq:AT3G12860 | TAIR:AT3G12860 | RefSeq:AT3G12860-TAIR-G |
| EnsemblPlants:AT3G12860.1 | TAIR:AT3G12860.1 | ProteinID:BAB02430.1 | ncoils:Coil | GO:GO:0000154 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019013 | GO:GO:0030515 | GO:GO:0030529 | GO:GO:0031428 | GO:GO:0032040 | InterPro:Helix_hairpin_bin_sf |
| InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOP5_N | InterPro:NOSIC | RefSeq:NP_187892.2 | InterPro:Nop_dom |
| InterPro:Nop_dom_sf | ProteinID:OAP07020.1 | PFAM:PF01798 | PFAM:PF08156 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51358 |
| PANTHER:PTHR10894 | PANTHER:PTHR10894:SF0 | UniProt:Q9LTV0 | SMART:SM00931 | SUPFAM:SSF89124 | UniParc:UPI00000A203C |
| SEG:seg | : | : | : | : | : |
Description
NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
Coordinates
chr3:+:4091567..4094195
Molecular Weight (calculated)
56183.3 Da
IEP (calculated)
9.231
GRAVY (calculated)
-0.564
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.