Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27120.1 | Thale cress | cytosol | 84.43 | 84.43 |
| Zm00001d034259_P001 | Maize | cytosol | 22.89 | 82.99 |
| Zm00001d038818_P001 | Maize | cytosol | 42.4 | 78.2 |
| Zm00001d007484_P001 | Maize | cytosol | 49.34 | 76.68 |
| Solyc05g055880.2.1 | Tomato | nucleus | 73.17 | 76.02 |
| PGSC0003DMT400015638 | Potato | cytosol | 75.8 | 73.72 |
| PGSC0003DMT400060016 | Potato | cytosol | 74.48 | 73.38 |
| Solyc09g083080.2.1 | Tomato | nucleus | 75.42 | 72.83 |
| Zm00001d011996_P002 | Maize | cytosol | 41.84 | 72.17 |
| KRH29399 | Soybean | nucleus | 74.3 | 71.87 |
| KRH24415 | Soybean | nucleus | 74.86 | 71.76 |
| VIT_14s0030g01270.t01 | Wine grape | nucleus | 76.55 | 71.2 |
| TraesCS2A01G119400.1 | Wheat | nucleus | 72.8 | 69.29 |
| TraesCS2D01G120400.1 | Wheat | nucleus | 72.42 | 68.93 |
| HORVU2Hr1G020690.6 | Barley | cytosol | 69.79 | 68.89 |
| TraesCS1B01G379200.1 | Wheat | cytosol | 72.23 | 68.75 |
| HORVU4Hr1G041810.4 | Barley | cytosol | 69.98 | 68.69 |
| Os03t0350300-01 | Rice | nucleus | 72.8 | 68.31 |
| Os03t0350100-02 | Rice | nucleus | 72.42 | 67.96 |
| Zm00001d047481_P003 | Maize | plastid | 71.48 | 67.79 |
| GSMUA_Achr11P... | Banana | cytosol | 74.3 | 67.69 |
| Zm00001d029144_P004 | Maize | cytosol | 71.29 | 67.38 |
| KXG39385 | Sorghum | cytosol | 71.86 | 67.31 |
| KXG34017 | Sorghum | cytosol | 71.48 | 67.08 |
| GSMUA_Achr8P09940_001 | Banana | cytosol | 73.92 | 67.01 |
| AT5G27140.2 | Thale cress | cytosol | 55.35 | 65.56 |
| TraesCS4A01G141500.1 | Wheat | nucleus | 70.92 | 65.4 |
| TraesCS2B01G139100.1 | Wheat | endoplasmic reticulum, plastid | 72.61 | 63.76 |
| Zm00001d031027_P001 | Maize | plastid | 54.22 | 48.9 |
| Zm00001d036776_P001 | Maize | mitochondrion | 53.85 | 46.67 |
| AT1G56110.1 | Thale cress | nucleus | 41.28 | 42.15 |
| AT3G12860.1 | Thale cress | nucleus | 38.46 | 41.08 |
| AT1G60170.1 | Thale cress | nucleus | 18.39 | 20.21 |
| AT1G70400.3 | Thale cress | cytosol | 8.63 | 16.79 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | MapMan:17.1.1.2.1.5.3 | EntrezGene:819668 | UniProt:A0A178VAY0 |
| ProteinID:AAF27012.1 | ProteinID:AEE74181.1 | EMBL:AF302491 | EMBL:AF412080 | ArrayExpress:AT3G05060 | EnsemblPlantsGene:AT3G05060 |
| RefSeq:AT3G05060 | TAIR:AT3G05060 | RefSeq:AT3G05060-TAIR-G | EnsemblPlants:AT3G05060.1 | TAIR:AT3G05060.1 | Unigene:At.16937 |
| ncoils:Coil | GO:GO:0000154 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0030515 | GO:GO:0031428 |
| GO:GO:0032040 | GO:GO:0042254 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOP5_N |
| InterPro:NOSIC | RefSeq:NP_187157.1 | InterPro:Nop_dom | InterPro:Nop_dom_sf | ProteinID:OAP03066.1 | PFAM:PF01798 |
| PFAM:PF08156 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS51358 | PANTHER:PTHR10894 | PANTHER:PTHR10894:SF1 | UniProt:Q9MAB3 | SMART:SM00931 | SUPFAM:SSF89124 |
| UniParc:UPI00000A81F4 | SEG:seg | : | : | : | : |
Description
NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
Coordinates
chr3:-:1412867..1416056
Molecular Weight (calculated)
59006.4 Da
IEP (calculated)
9.861
GRAVY (calculated)
-0.550
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.