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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24415 Soybean nucleus 97.28 96.4
Zm00001d038818_P001 Maize cytosol 43.19 82.35
Zm00001d034259_P001 Maize cytosol 21.96 82.31
Solyc05g055880.2.1 Tomato nucleus 73.68 79.14
Zm00001d007484_P001 Maize cytosol 48.64 78.13
PGSC0003DMT400015638 Potato cytosol 77.13 77.55
Solyc09g083080.2.1 Tomato nucleus 77.13 76.99
VIT_14s0030g01270.t01 Wine grape nucleus 80.04 76.96
PGSC0003DMT400060016 Potato cytosol 74.95 76.34
CDX80674 Canola cytosol 73.87 75.93
CDX86179 Canola nucleus 73.32 75.23
Bra009978.1-P Field mustard nucleus 73.32 75.23
CDY00004 Canola nucleus 73.14 75.19
CDY19706 Canola nucleus 72.96 75.14
Bra036111.1-P Field mustard nucleus 72.6 74.63
AT3G05060.1 Thale cress cytosol 71.87 74.3
Zm00001d011996_P002 Maize cytosol 41.38 73.79
TraesCS2D01G120400.1 Wheat nucleus 74.77 73.57
HORVU2Hr1G020690.6 Barley cytosol 72.05 73.52
TraesCS2A01G119400.1 Wheat nucleus 74.59 73.39
CDY52494 Canola nucleus 70.6 73.26
TraesCS1B01G379200.1 Wheat cytosol 74.41 73.21
AT5G27120.1 Thale cress cytosol 70.6 72.98
Bra020601.1-P Field mustard nucleus 64.43 72.75
Os03t0350100-02 Rice nucleus 74.59 72.36
Os03t0350300-01 Rice nucleus 74.23 72.01
GSMUA_Achr8P09940_001 Banana cytosol 76.59 71.77
HORVU4Hr1G041810.4 Barley cytosol 70.6 71.64
GSMUA_Achr11P... Banana cytosol 76.04 71.62
Zm00001d029144_P004 Maize cytosol 72.96 71.28
Zm00001d047481_P003 Maize plastid 72.6 71.17
KXG39385 Sorghum cytosol 72.96 70.65
KXG34017 Sorghum cytosol 72.6 70.42
CDY50583 Canola cytosol, mitochondrion, nucleus, plastid 66.79 70.1
TraesCS4A01G141500.1 Wheat nucleus 72.05 68.69
TraesCS2B01G139100.1 Wheat endoplasmic reticulum, plastid 74.41 67.55
AT5G27140.2 Thale cress cytosol 51.36 62.89
Zm00001d031027_P001 Maize plastid 54.99 51.27
Zm00001d036776_P001 Maize mitochondrion 54.27 48.62
KRH48644 Soybean nucleus 37.75 37.68
KRH57211 Soybean nucleus 37.21 37.27
KRH03927 Soybean nucleus 36.84 36.98
KRH07033 Soybean nucleus 17.79 20.16
KRG94405 Soybean nucleus 17.79 20.16
Protein Annotations
Gene3D:1.10.150.460Gene3D:1.10.246.90Gene3D:1.10.287.660EntrezGene:100784721MapMan:17.1.1.2.1.5.3EMBL:ACUP02006800
ncoils:CoilEnsemblPlantsGene:GLYMA_11G114300GO:GO:0000154GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0030515GO:GO:0031428
GO:GO:0032040InterPro:Helix_hairpin_bin_sfUniProt:I1LJA4InterPro:IPR002687InterPro:IPR029012EnsemblPlants:KRH29399
ProteinID:KRH29399ProteinID:KRH29399.1InterPro:NOP5_NInterPro:NOSICInterPro:Nop_domInterPro:Nop_dom_sf
PFAM:PF01798PFAM:PF08156PFscan:PS51358PANTHER:PTHR10894PANTHER:PTHR10894:SF1SMART:SM00931
SUPFAM:SSF89124UniParc:UPI000233CCB3SEG:seg:::
Description
hypothetical protein
Coordinates
chr11:-:8729787..8734082
Molecular Weight (calculated)
60853.4 Da
IEP (calculated)
9.629
GRAVY (calculated)
-0.542
Length
551 amino acids
Sequence
(BLAST)
001: MLVLFETPAG FALFKVLDEG KLSKVEDLWK NFSSADTARQ VVKLKAFSKF ENTSEALEAA TLLIDGKASK GLRKFLRVHC ENETLGVADS KLGNVIKEKL
101: KIDCIHNNAV MELMRGVRNQ LTELISGLAV QDMAPMSLGL SHSLSRYKLK FSAEKVDTMI VQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIIQDNI
201: LYARAVKLMG DRVNAASLDF SEILPEEVEA ELKEASVISM GTEIGELDLA NIRELCDQVL SLSEYRAQLY DYLKSRMNTI APNLTAMVGE LVGARLIAHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KFKGKISRSL AAKTALAIRC DALGDGQDNT MGLENRAKLE ARLRNLEGKE
401: LGRFAGSAKG KPKIEAYDKD RKKGAGGLIT PAKTYNPSAD SVIGQMVDSA IDEDAQEPSV ADKKKEKKDK KKKKDKKEED ATVQADGEEP EPVVVKKDKK
501: KKRKETESAE LQNGNDDNAG EKKKKRKKQG EQEESPEMPS KKKGKKKKSE D
Best Arabidopsis Sequence Match ( AT5G27120.1 )
(BLAST)
001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV
Arabidopsis Description
NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.