Factsheet for TraesCS2B01G139100.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G379200.1	Wheat	cytosol	89.13	96.61
HORVU2Hr1G020690.6	Barley	cytosol	82.54	92.78
Zm00001d038818_P001	Maize	cytosol	43.49	91.35
Zm00001d034259_P001	Maize	cytosol	21.75	89.8
Zm00001d007484_P001	Maize	cytosol	48.27	85.42
Os03t0350300-01	Rice	nucleus	79.57	85.04
Os03t0350100-02	Rice	nucleus	79.24	84.68
Zm00001d047481_P003	Maize	plastid	77.76	83.99
KXG39385	Sorghum	cytosol	77.92	83.13
KXG34017	Sorghum	cytosol	77.59	82.92
Zm00001d029144_P004	Maize	cytosol	76.94	82.8
Zm00001d011996_P002	Maize	cytosol	40.2	78.96
Solyc05g055880.2.1	Tomato	nucleus	66.23	78.36
PGSC0003DMT400060016	Potato	cytosol	67.87	76.16
PGSC0003DMT400015638	Potato	cytosol	68.7	76.09
GSMUA_Achr8P09940_001	Banana	cytosol	73.31	75.68
GSMUA_Achr11P...	Banana	cytosol	72.49	75.21
Solyc09g083080.2.1	Tomato	nucleus	68.37	75.18
VIT_14s0030g01270.t01	Wine grape	nucleus	70.51	74.69
KRH29399	Soybean	nucleus	67.55	74.41
CDX80674	Canola	cytosol	65.57	74.25
CDY19706	Canola	nucleus	65.24	74.02
KRH24415	Soybean	nucleus	67.55	73.74
CDY00004	Canola	nucleus	65.07	73.69
CDX86179	Canola	nucleus	65.07	73.56
Bra009978.1-P	Field mustard	nucleus	65.07	73.56
Bra036111.1-P	Field mustard	nucleus	64.74	73.32
AT3G05060.1	Thale cress	cytosol	63.76	72.61
AT5G27120.1	Thale cress	cytosol	63.43	72.23
CDY52494	Canola	nucleus	62.6	71.56
Bra020601.1-P	Field mustard	nucleus	56.84	70.7
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	60.3	69.71
AT5G27140.2	Thale cress	cytosol	46.13	62.22
Zm00001d031027_P001	Maize	plastid	56.67	58.21
Zm00001d036776_P001	Maize	mitochondrion	56.01	55.28
TraesCS1B01G401000.1	Wheat	nucleus	35.42	39.16
TraesCS2B01G148000.1	Wheat	nucleus	34.43	38.7
TraesCS2B01G147900.1	Wheat	plastid	27.35	35.85
TraesCS2B01G046400.1	Wheat	nucleus	15.65	19.96
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.49	18.22
TraesCS2B01G267700.1	Wheat	cytosol	13.18	17.09

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	ncoils:Coil	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931
SUPFAM:SSF101447	SUPFAM:SSF89124	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2B01G139100	EnsemblPlants:TraesCS2B01G139100.1	SEG:seg

Description

No Description!

Coordinates

chr2B:-:105991732..105995237

Molecular Weight (calculated)

66669.3 Da

IEP (calculated)

9.430

GRAVY (calculated)

-0.550

Length

607 amino acids

Sequence
(BLAST)

001: MSPKTLAALL LLPTPRGASF PLLHSPPPPP PAPPPPPLVL LYTGAEEMLV LFETPAGFAL FKVLDEGKLS KVEDLWQDFA SSDKARKVVE LKAFNKFENT
101: SDALSAATLL IDSKPSKGLR KFLQKHCDGE TLAVADSKLG NAIKEKLKID CLHNSAVMEL MRGLRNQLTE LMSGLAEHDL GPMSLGLSHS LSRYKLKFSP
201: EKVDTMIIQA IGLLDDLDKE LNTYAMRVRE WYGWHFPELT KIVADNIHYA KAVKMMGNRV NAVNLDFSEI LPEDVEAELK EAAVISMGTE VNDLDLSNIR
301: ELCDQVLALS EYRAQLYDYL KSRMNTIAPN LTALVGELVG ARLIAHGGSL MNLAKQPGST IQILGAEKAL FRALKTKHAT PKYGLIYHAS LIGQAAPKHK
401: GKISRSLAAK SALAIRYDAL ADGDDNSMGL ESRIKLETRL RVLEGKELGR SAGSTKGKPK IEAYEKDRKG GGALITPAKT YNSAADLVLG QTTEETPKKS
501: EVASKKRKHQ EEEPTAEAAE EDGEQEKERS KKKKKKSKDI EETPADVTDA SEKKKKKSKE AEETPATDAD GGKKKKKKKS DAEDTPMETD VSAKKEKKKK
601: KKKHADE

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.