Factsheet for GSMUA_Achr8P09940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	90.14	90.6
Zm00001d038818_P001	Maize	cytosol	44.05	89.62
Zm00001d034259_P001	Maize	cytosol	22.11	88.44
Zm00001d007484_P001	Maize	cytosol	48.81	83.67
Solyc05g055880.2.1	Tomato	nucleus	71.26	81.68
Os03t0350100-02	Rice	nucleus	77.38	80.11
Os03t0350300-01	Rice	nucleus	77.21	79.93
Zm00001d029144_P004	Maize	cytosol	76.19	79.43
TraesCS2D01G120400.1	Wheat	nucleus	75.51	79.29
TraesCS2A01G119400.1	Wheat	nucleus	75.51	79.29
Zm00001d047481_P003	Maize	plastid	75.68	79.18
KXG34017	Sorghum	cytosol	76.36	79.05
TraesCS1B01G379200.1	Wheat	cytosol	75.17	78.93
HORVU4Hr1G041810.4	Barley	cytosol	72.79	78.82
PGSC0003DMT400060016	Potato	cytosol	72.45	78.74
KXG39385	Sorghum	cytosol	76.19	78.73
HORVU2Hr1G020690.6	Barley	cytosol	72.28	78.7
PGSC0003DMT400015638	Potato	cytosol	73.3	78.65
Zm00001d011996_P002	Maize	cytosol	41.33	78.64
VIT_14s0030g01270.t01	Wine grape	nucleus	76.36	78.36
Solyc09g083080.2.1	Tomato	nucleus	72.45	77.17
KRH29399	Soybean	nucleus	71.77	76.59
KRH24415	Soybean	nucleus	72.11	76.26
TraesCS4A01G141500.1	Wheat	nucleus	74.15	75.43
AT3G05060.1	Thale cress	cytosol	67.01	73.92
CDX80674	Canola	cytosol	67.35	73.88
Bra009978.1-P	Field mustard	nucleus	67.35	73.74
CDX86179	Canola	nucleus	67.35	73.74
CDY19706	Canola	nucleus	67.01	73.64
CDY00004	Canola	nucleus	67.01	73.51
Bra036111.1-P	Field mustard	nucleus	66.84	73.32
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	75.68	73.31
AT5G27120.1	Thale cress	cytosol	66.33	73.17
CDY52494	Canola	nucleus	64.8	71.75
Bra020601.1-P	Field mustard	nucleus	58.67	70.7
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	62.76	70.29
AT5G27140.2	Thale cress	cytosol	47.79	62.44
Zm00001d031027_P001	Maize	plastid	54.93	54.65
Zm00001d036776_P001	Maize	mitochondrion	54.42	52.03
GSMUA_Achr5P08210_001	Banana	nucleus	36.05	38.13
GSMUA_AchrUn_...	Banana	nucleus	35.2	37.1
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.33	19.51
GSMUA_Achr9P14550_001	Banana	plasma membrane	12.59	16.93

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	ncoils:Coil	EnsemblPlantsGene:GSMUA_Achr8G09940_001
EnsemblPlants:GSMUA_Achr8P09940_001	EnsemblPlants:GSMUA_Achr8T09940_001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M0TP47
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000296D87C
SEG:seg	:	:	:	:	:

Description

Probable nucleolar protein 5-2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G09940_001]

Coordinates

chr8:-:7044012..7051978

Molecular Weight (calculated)

64781.1 Da

IEP (calculated)

9.818

GRAVY (calculated)

-0.583

Length

588 amino acids

Sequence
(BLAST)

001: MLVLFETPAG LALFKVLDEG KLDKVEDLWK EFATSESARQ IVKLKAFNKF ENTSDALSAA TLLIDSKPSK GLRKFLRAHC DGETLAVADS KLGNAIKEKL
101: KIDCLHNNAV MELMRGLRNQ LTELISGLAV QDLAPMSLGL SHSLSRYKLK FSPDKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELSKIVQDNI
201: QYAKVVKLMG NRTNAVNLDF SEVLSEDTEA ELKEAAVISM GTEVSDLDLA NIKELCDQVL ALSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLIAHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASLIGQAAP KIKGKISRSL AAKTALAIRY DALGDGQDNT MGLENRAKLE ARLRVLEGRE
401: LGRSAGSTKG KPKIEFYDKD RKKGAGALIT PAKTYNPSAD LVLGQTTDPA PKKPDSEHEV ARPKRKHGEA ELAPTGEAAE GSLKEEGDGE GEKRKKKKRK
501: VESVDTVNQI PIDEAEEPMK KKKKKKKDEA HASELANRDD SAAPESKEEL SKEEKKKKKK KQAEEVQEAG DSASKKKNKK KKKKDMGQ

Best Arabidopsis Sequence Match ( AT5G27120.1 )
(BLAST)

001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV

Arabidopsis Description

NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.