Factsheet for TraesCS2A01G119400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G120400.1	Wheat	nucleus	98.75	98.75
TraesCS1B01G379200.1	Wheat	cytosol	98.04	98.04
HORVU2Hr1G020690.6	Barley	cytosol	89.82	93.15
TraesCS4A01G141500.1	Wheat	nucleus	83.57	80.97
Solyc05g055880.2.1	Tomato	nucleus	72.14	78.75
PGSC0003DMT400060016	Potato	cytosol	74.46	77.08
PGSC0003DMT400015638	Potato	cytosol	75.0	76.64
Solyc09g083080.2.1	Tomato	nucleus	74.46	75.54
GSMUA_Achr8P09940_001	Banana	cytosol	79.29	75.51
GSMUA_Achr11P...	Banana	cytosol	78.75	75.38
VIT_14s0030g01270.t01	Wine grape	nucleus	76.79	75.04
CDX80674	Canola	cytosol	71.43	74.63
KRH29399	Soybean	nucleus	73.39	74.59
CDY19706	Canola	nucleus	71.07	74.39
CDY00004	Canola	nucleus	71.07	74.25
CDX86179	Canola	nucleus	71.07	74.12
Bra009978.1-P	Field mustard	nucleus	71.07	74.12
KRH24415	Soybean	nucleus	73.39	73.92
Bra036111.1-P	Field mustard	nucleus	70.54	73.69
AT3G05060.1	Thale cress	cytosol	69.29	72.8
AT5G27120.1	Thale cress	cytosol	69.11	72.61
CDY52494	Canola	nucleus	68.21	71.94
Bra020601.1-P	Field mustard	nucleus	62.14	71.31
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	65.71	70.1
AT5G27140.2	Thale cress	cytosol	50.36	62.67
TraesCS1A01G379300.1	Wheat	nucleus	38.93	39.78
TraesCS2A01G125500.1	Wheat	nucleus	37.5	38.96
TraesCS2A01G125400.1	Wheat	cytosol, plastid	30.18	36.42
TraesCS1A01G376100.1	Wheat	nucleus	17.68	20.41
TraesCS2A01G254400.1	Wheat	cytosol	1.96	8.87

Protein Annotations

EnsemblPlants:TraesCS2A01G119400.1	EnsemblPlantsGene:TraesCS2A01G119400	Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
ncoils:Coil	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
SEG:seg	SMART:SM00931	SUPFAM:SSF89124	MapMan:17.1.1.2.1.5.3	:	:

Description

No Description!

Coordinates

chr2A:-:69352089..69355627

Molecular Weight (calculated)

61779.2 Da

IEP (calculated)

9.262

GRAVY (calculated)

-0.575

Length

560 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLSSVEDLWK DFASSDNARK VVELKAFNKF ENTSDALSAA TLLIDSKPSK GLRKFLQKHC DGETLAVADS KLGNAIKEKL
101: QIDCLHNSAV MELMRGLRNQ LTELMSGLAE HDLGPMSLGL SHSLSRYKLK FSPEKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIVADNI
201: HYAKAVKMMG NRVNAVNLDF SEILPEEVEA ELKEAAVISM GTEVNDLDLS NIRELCDQVL ALSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLMNLAKQP GSTIQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KHKGKISRSL AAKSALAIRY DALADGDDNS MGLESRIKLE TRLRVLEGKE
401: LGRSAGSTKG KPKIEAYEKD RKGGGALITP AKTYNSAADL VLGQTTEETP KKSEVASKKR KHQEEEPTAE AAEEDGEQEK EKSKKKKKKS KDIEETPAAV
501: TDASEKKKKK KSKEAEETPA ADADGEKKKK KKKLDAEDAP MEIDVSAKKE KKKKKKHADE

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.