Factsheet for TraesCS2D01G120400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 26579155

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G119400.1	Wheat	nucleus	98.75	98.75
TraesCS1B01G379200.1	Wheat	cytosol	98.21	98.21
HORVU2Hr1G020690.6	Barley	cytosol	90.0	93.33
Zm00001d038818_P001	Maize	cytosol	46.96	91.0
Zm00001d034259_P001	Maize	cytosol	23.57	89.8
Os03t0350300-01	Rice	nucleus	86.25	85.04
Zm00001d007484_P001	Maize	cytosol	51.96	84.84
Os03t0350100-02	Rice	nucleus	85.71	84.51
Zm00001d047481_P003	Maize	plastid	83.57	83.27
KXG39385	Sorghum	cytosol	84.11	82.78
Zm00001d029144_P004	Maize	cytosol	83.04	82.45
KXG34017	Sorghum	cytosol	83.57	82.39
Zm00001d011996_P002	Maize	cytosol	43.75	79.29
Solyc05g055880.2.1	Tomato	nucleus	72.14	78.75
PGSC0003DMT400060016	Potato	cytosol	74.82	77.45
PGSC0003DMT400015638	Potato	cytosol	75.0	76.64
Solyc09g083080.2.1	Tomato	nucleus	74.46	75.54
GSMUA_Achr8P09940_001	Banana	cytosol	79.29	75.51
GSMUA_Achr11P...	Banana	cytosol	78.75	75.38
VIT_14s0030g01270.t01	Wine grape	nucleus	76.61	74.87
KRH29399	Soybean	nucleus	73.57	74.77
CDX80674	Canola	cytosol	71.07	74.25
KRH24415	Soybean	nucleus	73.57	74.1
CDY19706	Canola	nucleus	70.71	74.02
CDY00004	Canola	nucleus	70.71	73.88
CDX86179	Canola	nucleus	70.71	73.74
Bra009978.1-P	Field mustard	nucleus	70.71	73.74
Bra036111.1-P	Field mustard	nucleus	70.18	73.32
AT3G05060.1	Thale cress	cytosol	68.93	72.42
AT5G27120.1	Thale cress	cytosol	68.75	72.23
CDY52494	Canola	nucleus	67.86	71.56
Bra020601.1-P	Field mustard	nucleus	61.79	70.9
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	65.36	69.71
AT5G27140.2	Thale cress	cytosol	50.54	62.89
Zm00001d031027_P001	Maize	plastid	58.57	55.5
Zm00001d036776_P001	Maize	mitochondrion	57.86	52.68
TraesCS1D01G386500.1	Wheat	nucleus	38.75	39.6
TraesCS2D01G128600.1	Wheat	nucleus	37.5	38.96
TraesCS2D01G128500.1	Wheat	plastid	30.89	37.2
TraesCS1D01G383400.2	Wheat	nucleus	17.68	20.41
TraesCS2D01G254900.1	Wheat	cytosol	1.79	8.06

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	ncoils:Coil	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931
SUPFAM:SSF89124	EnsemblPlantsGene:TraesCS2D01G120400	EnsemblPlants:TraesCS2D01G120400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:-:69535155..69538477

Molecular Weight (calculated)

61767.2 Da

IEP (calculated)

9.525

GRAVY (calculated)

-0.589

Length

560 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLSSVEDLWK DFASSDKARK VVELKAFNKF ENTSDALSAA TLLIDSKPSK GLRKFLQKHC DGETLAVADS KLGNAIKEKL
101: QIDCLHNSAV MELMRGLRNQ LTELMSGLAE HDLGPMSLGL SHSLSRYKLK FSPEKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIVADNI
201: HYAKAVKMMG NRVNAVNLDF SEILPEEVEA ELKEAAVISM GTEVNDLDLS NIRELCDQVL ALSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLMNLAKQP GSTIQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KHKGKISRSL AAKSALAIRY DALADGDDNS MGLESRIKLE TRLRVLEGKE
401: LGRSAGSTKG KPKIEAYEKD RKGGGALITP AKTYNSAADL VLGQTTEETP KKSEVASKKR KHQEEEPTAE AAEQDGEQEK EKSKKKKKKS KDIEETPAAV
501: TDASEKKKKK KSKEAEDTPA ANTDGEKKKK KKKSDAEDAP MEVDVSAKKE KKKKKKHADE

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.