Factsheet for Solyc09g083080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015638	Potato	cytosol	96.74	97.45
Solyc05g055880.2.1	Tomato	nucleus	82.25	88.5
Zm00001d038818_P001	Maize	cytosol	43.84	83.74
Zm00001d034259_P001	Maize	cytosol	21.74	81.63
VIT_14s0030g01270.t01	Wine grape	nucleus	83.51	80.45
Zm00001d007484_P001	Maize	cytosol	48.91	78.72
KRH29399	Soybean	nucleus	76.99	77.13
KRH24415	Soybean	nucleus	77.54	76.98
CDX80674	Canola	cytosol	73.73	75.93
AT3G05060.1	Thale cress	cytosol	72.83	75.42
CDX86179	Canola	nucleus	73.01	75.05
Bra009978.1-P	Field mustard	nucleus	73.01	75.05
Bra036111.1-P	Field mustard	nucleus	72.83	75.0
CDY19706	Canola	nucleus	72.64	74.95
CDY00004	Canola	nucleus	72.64	74.81
TraesCS2A01G119400.1	Wheat	nucleus	75.54	74.46
TraesCS2D01G120400.1	Wheat	nucleus	75.54	74.46
HORVU2Hr1G020690.6	Barley	cytosol	72.64	74.26
TraesCS1B01G379200.1	Wheat	cytosol	75.0	73.93
GSMUA_Achr11P...	Banana	cytosol	78.08	73.68
AT5G27120.1	Thale cress	cytosol	71.01	73.55
CDY52494	Canola	nucleus	70.47	73.26
HORVU4Hr1G041810.4	Barley	cytosol	71.74	72.93
Os03t0350100-02	Rice	nucleus	75.0	72.89
Zm00001d011996_P002	Maize	cytosol	40.76	72.82
GSMUA_Achr8P09940_001	Banana	cytosol	77.17	72.45
Os03t0350300-01	Rice	nucleus	74.46	72.36
KXG39385	Sorghum	cytosol	74.46	72.23
Bra020601.1-P	Field mustard	nucleus	63.77	72.13
Zm00001d047481_P003	Maize	plastid	73.19	71.89
Zm00001d029144_P004	Maize	cytosol	73.19	71.63
KXG34017	Sorghum	cytosol	73.37	71.3
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	67.75	71.24
TraesCS4A01G141500.1	Wheat	nucleus	72.28	69.03
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	75.18	68.37
AT5G27140.2	Thale cress	cytosol	51.81	63.56
Zm00001d031027_P001	Maize	plastid	56.52	52.79
Zm00001d036776_P001	Maize	mitochondrion	55.43	49.76
Solyc01g100570.2.1	Tomato	nucleus	39.31	39.24
Solyc01g094310.1.1	Tomato	cytosol	3.99	24.18
Solyc01g094300.1.1	Tomato	extracellular	8.7	22.12
Solyc08g078430.2.1	Tomato	nucleus	17.03	19.46
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	14.67	17.88

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	ncoils:Coil	GO:GO:0000154
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030515	GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	UniProt:K4CVT4	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931
SUPFAM:SSF89124	EnsemblPlantsGene:Solyc09g083080.2	EnsemblPlants:Solyc09g083080.2.1	UniParc:UPI000276C530	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:68744153..68748170

Molecular Weight (calculated)

61012.4 Da

IEP (calculated)

9.522

GRAVY (calculated)

-0.577

Length

552 amino acids

Sequence
(BLAST)

001: MILPEMLVLF ETPAGFALFK VLDEGKLSKV EDLWKDFSST DSARKVVKLK AFSKFENTSE ALSAATLLID SKPSKGLRKF LKAHCDGETL GVADSKLGNA
101: IKEKLQIDCV HNNAVMELMR GVRSQLTELI SGLASQDLAP MSLGLSHSLS RYKLKFSPDK VDTMIVQAIS LLDDLDKELN TYAMRVREWY GWHFPELAKI
201: VQDNILYAKA VKLMGDRTNA AKLDFSEILP EEVETALKEA SMISMGTEVS DLDLENIKDL CTQVLSFSEY RAQLYDYLKS RMNTIAPNLT ALVGELVGAR
301: LIAHGGSLMN LAKQPGSTVQ ILGAEKALFR ALKTKHATPK YGLIYHASLI GQAAPKHKGK ISRSLAAKTA LAIRYDALAD SQDNSMGLEN RAKLEARLRA
401: LEGKELSKSA GSAKGKPKIE VYDKDRKKGG LITPAKVYNP SADSVMGHTG NEEKKMSIDD QTEEAAGDES PVTKGEKKKK KKKSAEAEDG AEPEETGKKE
501: KKKKKKHADN EVENVELEQS KKKKRKHADV DEDEPETTEK KKDKKKKKKA EE

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.