Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g078430.2.1 | Tomato | nucleus | 81.32 | 15.32 |
| Solyc07g064070.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 75.82 | 15.23 |
| Solyc05g055880.2.1 | Tomato | nucleus | 25.27 | 4.48 |
| Solyc09g083080.2.1 | Tomato | nucleus | 24.18 | 3.99 |
| Solyc01g100570.2.1 | Tomato | nucleus | 19.78 | 3.25 |
| Solyc01g094300.1.1 | Tomato | extracellular | 1.1 | 0.46 |
| TraesCS2A01G254400.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS2D01G254900.1 | Wheat | cytosol | 0.0 | 0.0 |
| VIT_16s0039g02100.t01 | Wine grape | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.287.660 | MapMan:35.1 | GO:GO:0000244 | GO:GO:0000398 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005687 | GO:GO:0005690 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046540 | GO:GO:0071011 |
| GO:GO:0097526 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | UniProt:K4AZH2 | InterPro:NOSIC |
| InterPro:Nop_dom | InterPro:Nop_dom_sf | PFAM:PF01798 | PANTHER:PTHR13904 | InterPro:Prp31 | SMART:SM00931 |
| SUPFAM:SSF89124 | EnsemblPlantsGene:Solyc01g094310.1 | EnsemblPlants:Solyc01g094310.1.1 | UniParc:UPI00027687B7 | : | : |
Description
No Description!
Coordinates
chr1:-:85833379..85833654
Molecular Weight (calculated)
9988.2 Da
IEP (calculated)
4.329
GRAVY (calculated)
0.204
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MDCNALLIDI ENEISTIHNF IRDQYRLKFP ELESLVNHPI DYAGVVKRIG NAMEMTLVDL EGLLPSAVIM VVSVTASTTS GKPLPQDVGS M
001: MDMTELNTLT YDDLDSVSKL QKSRRYADIM QQVEEALEGS VLEYKKLIVD CKQLLVDIEN EIVIVQNFIR DKYRVKFQEL ELLVPHPIDY ARVVKRIGNE
101: MDLKLVDLEG LLPSAMIMVL LVTALTTKGN QLPEDVLLKT IDACDRALDL DSARKKVLEF VDCCIVCVTF
101: MDLKLVDLEG LLPSAMIMVL LVTALTTKGN QLPEDVLLKT IDACDRALDL DSARKKVLEF VDCCIVCVTF
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 479 Blast hits to 479 proteins in 178 species: Archae /.../Bacteria - 0; Metazoa - 125; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.