Factsheet for TraesCS2B01G147900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, endoplasmic reticulum, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G128500.1	Wheat	plastid	94.17	93.76
TraesCS2A01G125400.1	Wheat	cytosol, plastid	93.52	93.32
CDY08398	Canola	cytosol	3.89	75.0
Os07t0661800-01	Rice	nucleus	50.54	74.76
HORVU2Hr1G022120.1	Barley	mitochondrion	80.13	72.6
TraesCS1B01G401000.1	Wheat	nucleus	81.21	68.49
TraesCS2B01G148000.1	Wheat	nucleus	79.05	67.78
CDX98286	Canola	cytosol	19.65	67.41
EER97682	Sorghum	endoplasmic reticulum	72.14	59.12
GSMUA_AchrUn_...	Banana	nucleus	69.98	58.06
GSMUA_Achr5P08210_001	Banana	nucleus	68.47	57.01
AT3G12860.1	Thale cress	nucleus	61.34	56.91
CDY10510	Canola	nucleus	62.63	56.53
VIT_17s0000g01720.t01	Wine grape	nucleus	68.03	56.45
CDY59117	Canola	nucleus	62.42	56.12
CDY42406	Canola	nucleus	62.85	56.07
CDY63487	Canola	nucleus	63.07	56.05
Bra040785.1-P	Field mustard	nucleus	63.07	56.05
CDY57300	Canola	nucleus	61.12	56.04
Bra001474.1-P	Field mustard	nucleus	61.12	56.04
CDX82572	Canola	nucleus	61.12	56.04
Bra030816.1-P	Field mustard	nucleus	62.42	55.68
PGSC0003DMT400007150	Potato	nucleus	65.87	55.15
KRH03927	Soybean	nucleus	65.23	55.01
Solyc01g100570.2.1	Tomato	nucleus	65.66	54.97
KRH57211	Soybean	nucleus	65.23	54.91
KRH48644	Soybean	nucleus	65.01	54.53
AT1G56110.1	Thale cress	nucleus	61.34	54.41
CDY44398	Canola	cytosol	52.05	54.16
Bra033094.1-P	Field mustard	cytosol	52.05	54.16
CDY04069	Canola	cytosol	51.84	53.81
CDY52879	Canola	nucleus	30.89	44.27
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	20.95	43.11
CDY08399	Canola	endoplasmic reticulum, plasma membrane	12.31	32.2
TraesCS1B01G379200.1	Wheat	cytosol	36.29	30.0
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	35.85	27.35
TraesCS2B01G046400.1	Wheat	nucleus	15.55	15.13
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.2	14.53
TraesCS2B01G267700.1	Wheat	cytosol	13.82	13.68

Protein Annotations

EnsemblPlants:TraesCS2B01G147900.1	EnsemblPlantsGene:TraesCS2B01G147900	Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	SEG:seg
SMART:SM00931	SUPFAM:SSF89124	MapMan:17.1.1.2.1.5.2	:	:	:

Description

No Description!

Coordinates

chr2B:-:114052221..114056743

Molecular Weight (calculated)

51481.9 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.219

Length

463 amino acids

Sequence
(BLAST)

001: MTLYLLFESA SGYALFHASG IRKIGQTVDA VRPTLLDLKR FSRAVKLARF TPFLSAVDAI NQCNAVSEGI TTDELVNFLV LNLPKVKEWK KGKFTVGVAQ
101: PKVGSRITEA TGIPCQSDDF IQELLGAVRL HFGQLFDQLK PYDLENYSMA SADNMVTQTL FLLDTLDKGI NFFTMRVREW YGWHFPELVK VVNDNYLYAK
201: LAKFVANKSD LSEKDIPALA DLIGDEDKAK EIVEAAKASM GQDLSPVDLI NVQQFAQRVM NLSEYRKNIY EYLVTKMNDI APNLTSLIGE MVGAQLISNA
301: GSLSNLAKLP SSSLQILGAE KAMRRALKTG GNTPKYGHIF HSSFIGRAST KNKGRMARYL ASKCSMASRI DCYSDMSSSI FGEKMREQVE ERLDCCEKDV
401: AARKYLDVTK AAIECMTNTV SEEDKEENGG KKESNSEADD DAMHLDKPAM HSTLCTRLAI VEL

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.