Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034724.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 93.22 | 73.33 |
| Os07t0661800-01 | Rice | nucleus | 48.02 | 27.16 |
| CDY04069 | Canola | cytosol | 47.46 | 18.83 |
| CDX82572 | Canola | nucleus | 53.67 | 18.81 |
| CDY57300 | Canola | nucleus | 53.67 | 18.81 |
| CDY44398 | Canola | cytosol | 45.76 | 18.2 |
| CDY10510 | Canola | nucleus | 51.41 | 17.74 |
| CDY59117 | Canola | nucleus | 51.41 | 17.67 |
| CDY42406 | Canola | nucleus | 51.41 | 17.53 |
| CDY63487 | Canola | nucleus | 51.41 | 17.47 |
| GSMUA_Achr5P08210_001 | Banana | nucleus | 51.98 | 16.55 |
| VIT_17s0000g01720.t01 | Wine grape | nucleus | 51.41 | 16.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.85 | 16.13 |
| Zm00001d029174_P005 | Maize | nucleus | 49.72 | 16.03 |
| EER92268 | Sorghum | nucleus | 49.72 | 16.0 |
| Os03t0352300-01 | Rice | nucleus | 49.72 | 15.94 |
| KRH48644 | Soybean | nucleus | 49.15 | 15.76 |
| KRH57211 | Soybean | nucleus | 48.59 | 15.64 |
| Zm00001d047472_P002 | Maize | plastid | 49.72 | 15.47 |
| KRH03927 | Soybean | nucleus | 47.46 | 15.3 |
| TraesCS2D01G128600.1 | Wheat | nucleus | 45.76 | 15.03 |
| TraesCS2B01G148000.1 | Wheat | nucleus | 45.76 | 15.0 |
| TraesCS2A01G125500.1 | Wheat | nucleus | 45.2 | 14.84 |
| EER97682 | Sorghum | endoplasmic reticulum | 46.89 | 14.69 |
| Solyc01g100570.2.1 | Tomato | nucleus | 45.76 | 14.65 |
| PGSC0003DMT400007150 | Potato | nucleus | 45.76 | 14.65 |
| TraesCS1D01G386500.1 | Wheat | nucleus | 45.2 | 14.6 |
| TraesCS1A01G379300.1 | Wheat | nucleus | 45.2 | 14.6 |
| TraesCS1B01G401000.1 | Wheat | nucleus | 45.2 | 14.57 |
| HORVU2Hr1G022140.3 | Barley | nucleus | 44.63 | 14.11 |
| HORVU1Hr1G083960.6 | Barley | nucleus | 44.63 | 14.03 |
| HORVU2Hr1G022120.1 | Barley | mitochondrion | 38.42 | 13.31 |
| HORVU2Hr1G022110.2 | Barley | plastid | 38.98 | 12.61 |
| TraesCS2B01G147900.1 | Wheat | plastid | 32.2 | 12.31 |
| TraesCS2A01G125400.1 | Wheat | cytosol, plastid | 32.2 | 12.28 |
| TraesCS2D01G128500.1 | Wheat | plastid | 32.2 | 12.26 |
| CDY52879 | Canola | nucleus | 20.34 | 11.15 |
| CDX80674 | Canola | cytosol | 29.94 | 9.89 |
| CDX86179 | Canola | nucleus | 29.94 | 9.87 |
| CDY52494 | Canola | nucleus | 28.81 | 9.6 |
| CDY19706 | Canola | nucleus | 28.81 | 9.53 |
| CDY00004 | Canola | nucleus | 28.81 | 9.51 |
| CDY50583 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.68 | 9.33 |
| CDY08398 | Canola | cytosol | 0.56 | 4.17 |
| CDY04340 | Canola | plasma membrane | 6.78 | 2.53 |
| CDY72546 | Canola | nucleus | 5.65 | 2.38 |
| CDY24519 | Canola | nucleus | 6.21 | 2.26 |
| CDY54131 | Canola | mitochondrion | 6.21 | 2.23 |
| CDY39628 | Canola | nucleus | 5.65 | 2.19 |
| CDY36542 | Canola | nucleus | 3.95 | 1.67 |
| CDX98286 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY08399 | EnsemblPlantsGene:GSBRNA2T00000152001 | Gene3D:1.10.287.660 | GO:A0A078F5S8 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR029012 | PANTHER:PTHR10894 | PANTHER:PTHR10894:SF0 | ProteinID:CDY08399 |
| ProteinID:CDY08399.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EECCC6 | UniProt:A0A078F5S8 | MapMan:35.2 |
Description
BnaA05g26350DBnaA05g26350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5S8]
Coordinates
chrLK031986:-:25847..26532
Molecular Weight (calculated)
20779.9 Da
IEP (calculated)
10.770
GRAVY (calculated)
0.096
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGSTLALLR YVLFLGFSLL EFFFRIGFGC HFGYRVKCPP LLLQLPYNKA LYLGYMSKEL RSFCLPISLL WFGQRSVLAS LKPRRFLCQS NEFVHELLRG
101: VRQHFDRFIK DLKKRRNLDL AHSYSRAKVK FNFNRVDDMV IQAIFLLDTL AKDINSFDMR VRASLSQNPL KGLLINF
101: VRQHFDRFIK DLKKRRNLDL AHSYSRAKVK FNFNRVDDMV IQAIFLLDTL AKDINSFDMR VRASLSQNPL KGLLINF
001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE
Arabidopsis Description
NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.