CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0661800-01	Rice	nucleus	49.38	89.14
TraesCS2D01G128600.1	Wheat	nucleus	81.42	85.34
TraesCS2B01G148000.1	Wheat	nucleus	81.42	85.19
TraesCS1A01G379300.1	Wheat	nucleus	82.3	84.85
TraesCS1D01G386500.1	Wheat	nucleus	82.12	84.67
TraesCS2A01G125500.1	Wheat	nucleus	80.71	84.6
TraesCS1B01G401000.1	Wheat	nucleus	82.12	84.52
EER92268	Sorghum	nucleus	81.59	83.82
HORVU1Hr1G083960.6	Barley	nucleus	82.3	82.59
HORVU2Hr1G022140.3	Barley	nucleus	81.59	82.32
HORVU2Hr1G022110.2	Barley	plastid	75.58	78.06
GSMUA_AchrUn_...	Banana	nucleus	74.51	75.45
GSMUA_Achr5P08210_001	Banana	nucleus	73.98	75.18
CDY08398	Canola	cytosol	3.19	75.0
CDX98286	Canola	cytosol	17.52	73.33
VIT_17s0000g01720.t01	Wine grape	nucleus	72.04	72.94
CDY59117	Canola	nucleus	66.19	72.62
CDY63487	Canola	nucleus	66.9	72.55
Bra040785.1-P	Field mustard	nucleus	66.9	72.55
CDY10510	Canola	nucleus	65.66	72.32
TraesCS2D01G128500.1	Wheat	plastid	59.47	72.26
TraesCS2A01G125400.1	Wheat	cytosol, plastid	59.29	72.2
TraesCS2B01G147900.1	Wheat	plastid	59.12	72.14
CDY42406	Canola	nucleus	66.02	71.87
AT3G12860.1	Thale cress	nucleus	63.19	71.54
Bra030816.1-P	Field mustard	nucleus	65.66	71.48
PGSC0003DMT400007150	Potato	nucleus	68.85	70.34
AT1G56110.1	Thale cress	nucleus	64.96	70.31
KRH48644	Soybean	nucleus	68.5	70.11
CDY57300	Canola	nucleus	62.48	69.9
Solyc01g100570.2.1	Tomato	nucleus	68.32	69.8
KRH57211	Soybean	nucleus	67.79	69.64
Bra001474.1-P	Field mustard	nucleus	62.12	69.5
CDX82572	Canola	nucleus	62.12	69.5
KRH03927	Soybean	nucleus	67.43	69.4
HORVU2Hr1G022120.1	Barley	mitochondrion	62.48	69.08
CDY04069	Canola	cytosol	49.03	62.11
CDY44398	Canola	cytosol	48.32	61.35
Bra033094.1-P	Field mustard	cytosol	48.32	61.35
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	21.95	55.11
CDY52879	Canola	nucleus	30.62	53.56
CDY08399	Canola	endoplasmic reticulum, plasma membrane	14.69	46.89
KXG39385	Sorghum	cytosol	38.41	38.14
KXG34017	Sorghum	cytosol	37.7	37.5
KXG30826	Sorghum	nucleus	13.98	18.08
OQU82106	Sorghum	nucleus	13.63	15.91

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EntrezGene:8072268	UniProt:C5X4T2
EnsemblPlants:EER97682	ProteinID:EER97682	ProteinID:EER97682.1	GO:GO:0000154	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515
GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	EnsemblPlantsGene:SORBI_3002G406300	SUPFAM:SSF89124	unigene:Sbi.2264
UniParc:UPI0001A834FE	RefSeq:XP_002461161.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:75589048..75592640

Molecular Weight (calculated)

63251.8 Da

IEP (calculated)

9.246

GRAVY (calculated)

-0.576

Length

565 amino acids

Sequence
(BLAST)

001: MALYLLFEVA SGYALFHAYG IDEIGQSVDA VRASVLDLQR FGKAIRLTGF SPFSSAMDAI NQCNAISEGI MTDELRNFLE LNLPKVKEGK KAKYSLGVTE
101: PKVGSHITEA TGIPCQSNEF VQELLRGVRL HFDQFIDQLK KSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSISM RVREWYSWHF
201: PELVKIINDN YLYAKIAKFV VNKSDLAEKD IPALADLIGD EDKAKEIVEA AKASMGQDLS LVDLINVQLF AQGIMNLSEY RKKLYEYLVT KMNDIAPNLT
301: SLIGEVVGAR LISHAGSLSN LAKCAASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR MARYLANKCS IASRIDCYSE LNTSIFGQKL
401: RDQVEERLDF YDKGVAPRKN LDVMKAAIEG ISAVSEDVDG NEKNDVSAKK GKKKKSKTQT DGEAMDVDKL ADGEDEPQTE KKKKKKHKRE EPQDEEMATE
501: PLSDDVKQDE TPKKKKKKNH EATEDVEPKK KKKKNREAYE VVEPKTATEG KKKKKKKSKT EDSDE

Best Arabidopsis Sequence Match ( AT3G12860.1 )
(BLAST)

001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE

Arabidopsis Description

NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.