Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G083960.6 | Barley | nucleus | 87.2 | 84.72 |
| HORVU2Hr1G022140.3 | Barley | nucleus | 85.01 | 83.04 |
| Os07t0661800-01 | Rice | nucleus | 43.88 | 76.68 |
| EER97682 | Sorghum | endoplasmic reticulum | 78.06 | 75.58 |
| CDY08398 | Canola | cytosol | 3.29 | 75.0 |
| CDX98286 | Canola | cytosol | 18.46 | 74.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 72.21 | 70.79 |
| HORVU2Hr1G022120.1 | Barley | mitochondrion | 65.08 | 69.67 |
| GSMUA_Achr5P08210_001 | Banana | nucleus | 70.2 | 69.06 |
| VIT_17s0000g01720.t01 | Wine grape | nucleus | 70.02 | 68.64 |
| CDY59117 | Canola | nucleus | 63.62 | 67.57 |
| Bra040785.1-P | Field mustard | nucleus | 63.99 | 67.18 |
| CDY63487 | Canola | nucleus | 63.99 | 67.18 |
| AT3G12860.1 | Thale cress | nucleus | 61.24 | 67.13 |
| CDY10510 | Canola | nucleus | 62.89 | 67.06 |
| CDY42406 | Canola | nucleus | 63.62 | 67.05 |
| Bra030816.1-P | Field mustard | nucleus | 63.25 | 66.67 |
| PGSC0003DMT400007150 | Potato | nucleus | 66.91 | 66.18 |
| AT1G56110.1 | Thale cress | nucleus | 63.07 | 66.09 |
| CDX82572 | Canola | nucleus | 60.88 | 65.94 |
| Bra001474.1-P | Field mustard | nucleus | 60.88 | 65.94 |
| Solyc01g100570.2.1 | Tomato | nucleus | 66.54 | 65.82 |
| CDY57300 | Canola | nucleus | 60.69 | 65.74 |
| KRH57211 | Soybean | nucleus | 66.0 | 65.64 |
| KRH48644 | Soybean | nucleus | 66.0 | 65.4 |
| KRH03927 | Soybean | nucleus | 65.45 | 65.21 |
| CDY04069 | Canola | cytosol | 46.07 | 56.5 |
| Bra033094.1-P | Field mustard | cytosol | 45.52 | 55.96 |
| CDY44398 | Canola | cytosol | 45.52 | 55.96 |
| CDY52879 | Canola | nucleus | 30.35 | 51.39 |
| Bra034724.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 19.93 | 48.44 |
| CDY08399 | Canola | endoplasmic reticulum, plasma membrane | 12.61 | 38.98 |
| HORVU4Hr1G041810.4 | Barley | cytosol | 35.83 | 36.1 |
| HORVU2Hr1G020690.6 | Barley | cytosol | 34.19 | 34.63 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G022110.2 | EnsemblPlantsGene:HORVU2Hr1G022110 | Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | InterPro:Helix_hairpin_bin_sf |
| InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOSIC | InterPro:Nop_dom | InterPro:Nop_dom_sf | PANTHER:PTHR10894 |
| PANTHER:PTHR10894:SF0 | PFAM:PF01798 | PFscan:PS51358 | SEG:seg | SMART:SM00931 | SUPFAM:SSF89124 |
| UniParc:UPI000B47BC0B | UniProt:A0A287HC29 | MapMan:17.1.1.2.1.5.2 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:63478172..63481999
Molecular Weight (calculated)
60667.1 Da
IEP (calculated)
9.646
GRAVY (calculated)
-0.666
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: WRSTCSSSRR RDTRYSTPTA STRSGRAWTP SAPPCWTSSG SARLSSSPAS PPFLSAVDAL NQCNAISEGI MTDELRNFLE LNLPKVKEGK KAKFRVGVME
101: PKVGSHITEA TGIPCESNDY IQELLRAVRL HFDQFVEQLK PSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDVNSFSM RVREWYGWHF
201: PELVKIVNDN YLYAKLAKFV VNKSDLSEKD VPALADLIGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEMVGAR LISHAGSLSN LAKCPASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSD MSSSIFGEKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIEG MADAVSEEDK ENGGTSAKKS KKKKSKSEAD GDAMDLDKPA NTAAAEAEPE TGKKKKKKKH KLEEPQDQEI
501: AANGDAEQDE TPKKKKKKNR DAAESVEPKT ATEGKKKKKK SKTEADD
101: PKVGSHITEA TGIPCESNDY IQELLRAVRL HFDQFVEQLK PSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDVNSFSM RVREWYGWHF
201: PELVKIVNDN YLYAKLAKFV VNKSDLSEKD VPALADLIGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEMVGAR LISHAGSLSN LAKCPASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSD MSSSIFGEKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIEG MADAVSEEDK ENGGTSAKKS KKKKSKSEAD GDAMDLDKPA NTAAAEAEPE TGKKKKKKKH KLEEPQDQEI
501: AANGDAEQDE TPKKKKKKNR DAAESVEPKT ATEGKKKKKK SKTEADD
001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
Arabidopsis Description
NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.