Factsheet for Os03t0352300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 18203134
nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92268	Sorghum	nucleus	90.04	90.36
Zm00001d029174_P005	Maize	nucleus	88.41	88.89
Zm00001d047472_P002	Maize	plastid	89.49	86.82
Os07t0661800-01	Rice	nucleus	48.91	86.26
CDY08398	Canola	cytosol	3.44	79.17
GSMUA_AchrUn_...	Banana	nucleus	77.72	76.88
GSMUA_Achr5P08210_001	Banana	nucleus	75.91	75.36
VIT_17s0000g01720.t01	Wine grape	nucleus	75.72	74.91
CDY59117	Canola	nucleus	69.38	74.37
CDY63487	Canola	nucleus	69.75	73.9
Bra040785.1-P	Field mustard	nucleus	69.75	73.9
CDY42406	Canola	nucleus	69.2	73.6
CDY10510	Canola	nucleus	68.3	73.49
Bra030816.1-P	Field mustard	nucleus	68.84	73.22
AT3G12860.1	Thale cress	nucleus	65.76	72.75
KRH57211	Soybean	nucleus	72.28	72.55
KRH03927	Soybean	nucleus	71.74	72.13
PGSC0003DMT400007150	Potato	nucleus	72.1	71.97
CDX98286	Canola	cytosol	17.57	71.85
AT1G56110.1	Thale cress	nucleus	67.93	71.84
KRH48644	Soybean	nucleus	71.56	71.56
CDX82572	Canola	nucleus	65.4	71.49
CDY57300	Canola	nucleus	65.4	71.49
Bra001474.1-P	Field mustard	nucleus	65.4	71.49
Solyc01g100570.2.1	Tomato	nucleus	71.56	71.43
CDY04069	Canola	cytosol	50.54	62.56
Bra033094.1-P	Field mustard	cytosol	50.18	62.25
CDY44398	Canola	cytosol	50.18	62.25
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	23.37	57.33
CDY52879	Canola	nucleus	32.61	55.73
CDY08399	Canola	endoplasmic reticulum, plasma membrane	15.94	49.72
Os03t0350300-01	Rice	nucleus	40.22	39.08
Os03t0350100-02	Rice	nucleus	40.04	38.91
Os07t0141600-01	Rice	nucleus	15.58	17.77
Os04t0555400-01	Rice	nucleus	15.4	17.56
Os02t0730100-00	Rice	extracellular	1.99	7.48

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EntrezGene:4332851	ProteinID:ABF95947.1
ProteinID:BAF12036.1	ProteinID:BAS84204.1	ProteinID:EAZ26922.1	GO:GO:0000154	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515
GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	EnsemblPlantsGene:Os03g0352300	EnsemblPlants:Os03t0352300-01	PFAM:PF01798
PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	UniProt:Q10LF8	SMART:SM00931
SUPFAM:SSF89124	UniParc:UPI0000DB4D9B	RefSeq:XP_015631370.1	SEG:seg	:	:

Description

Similar to Nucleolar protein. (Os03t0352300-01);Similar to nucleolar protein Nop56. (Os03t0352300-02);Similar to nucleolar protein Nop56. (Os03t0352300-03)

Coordinates

chr3:-:13222688..13225476

Molecular Weight (calculated)

61335.1 Da

IEP (calculated)

8.906

GRAVY (calculated)

-0.568

Length

552 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYGLFHAYG IDEIGQSVDA VRASVVDLDR FGKAVKLAAF TPFSSAVDAL NQCNAISEGI MTDELRSFLE LNLPKPKEGK KAKYSLGVVE
101: PKVGSHISEV TGIPCQSNEF VQELLRGVRL HFDRFISELK KSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWFGWHF
201: PELVKIVNDN YIYAKLADYI KDKSELAEKD ISKLADLIGD EDKAKEVVEA AKASMGQDLS EVDLMNVKQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEVVGAR LISHAGSLSN LAKCPASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSE SATAVFGQKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIDS MVNDATNDVD DGEKVDASAK KSKKKKSKAE ADGEAMDLDK PSNVADEAEP GTEKKKKKKK HKLEEEPQEQ
501: EKSVAHANGD AEENGTPKKK KKKNREVSED AEPKTATEGK KKKKKSKTED SD

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.