Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72546 | Canola | nucleus | 80.0 | 92.38 |
| Bra031522.1-P | Field mustard | nucleus | 91.96 | 91.77 |
| CDY04340 | Canola | plasma membrane | 87.22 | 89.05 |
| CDY24519 | Canola | nucleus | 87.84 | 87.65 |
| CDY54131 | Canola | mitochondrion | 87.42 | 85.83 |
| KRH07033 | Soybean | nucleus | 78.35 | 78.19 |
| KRG94405 | Soybean | nucleus | 78.14 | 77.98 |
| GSMUA_Achr3P06150_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 77.32 | 76.22 |
| OQU82106 | Sorghum | nucleus | 75.26 | 75.41 |
| Zm00001d002716_P002 | Maize | nucleus | 75.05 | 75.05 |
| Os04t0555400-01 | Rice | nucleus | 74.64 | 74.79 |
| Os07t0141600-01 | Rice | nucleus | 74.43 | 74.59 |
| TraesCS1A01G376100.1 | Wheat | nucleus | 74.23 | 74.23 |
| TraesCS1D01G383400.2 | Wheat | nucleus | 74.23 | 74.23 |
| TraesCS2B01G046400.1 | Wheat | nucleus | 72.37 | 73.74 |
| VIT_01s0026g00230.t01 | Wine grape | cytosol | 75.67 | 72.1 |
| TraesCS1B01G396600.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 74.02 | 69.57 |
| TraesCS2B01G267700.1 | Wheat | cytosol | 63.92 | 66.24 |
| GSMUA_Achr9P14550_001 | Banana | plasma membrane | 58.35 | 64.76 |
| KXG30826 | Sorghum | nucleus | 56.49 | 62.7 |
| AT1G70400.3 | Thale cress | cytosol | 30.93 | 54.74 |
| Os02t0730100-00 | Rice | extracellular | 15.88 | 52.38 |
| AT5G27140.2 | Thale cress | cytosol | 17.94 | 19.33 |
| AT5G27120.1 | Thale cress | cytosol | 20.82 | 18.95 |
| AT3G05060.1 | Thale cress | cytosol | 20.21 | 18.39 |
| AT1G56110.1 | Thale cress | nucleus | 18.97 | 17.62 |
| AT3G12860.1 | Thale cress | nucleus | 17.11 | 16.63 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | MapMan:16.4.1.3.3 | EntrezGene:842312 | UniProt:A0A178WCJ2 |
| ProteinID:AAC24050.1 | ProteinID:AEE33664.1 | ArrayExpress:AT1G60170 | EnsemblPlantsGene:AT1G60170 | RefSeq:AT1G60170 | TAIR:AT1G60170 |
| RefSeq:AT1G60170-TAIR-G | EnsemblPlants:AT1G60170.1 | TAIR:AT1G60170.1 | EMBL:AY080777 | EMBL:AY084782 | EMBL:AY117155 |
| Unigene:At.21797 | GO:GO:0000244 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005681 | GO:GO:0005687 | GO:GO:0005690 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006346 | GO:GO:0006397 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009845 |
| GO:GO:0009987 | GO:GO:0015030 | GO:GO:0016043 | GO:GO:0030529 | GO:GO:0040029 | GO:GO:0046540 |
| GO:GO:0070417 | GO:GO:0071011 | GO:GO:0097526 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 |
| InterPro:NOSIC | RefSeq:NP_564754.1 | InterPro:Nop_dom | InterPro:Nop_dom_sf | ProteinID:OAP14752.1 | PFAM:PF01798 |
| PFAM:PF09785 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51358 | PANTHER:PTHR13904 | PANTHER:PTHR13904:SF0 | InterPro:Prp31 | InterPro:Prp31_C | UniProt:Q8RXN6 |
| SMART:SM00931 | SUPFAM:SSF89124 | UniParc:UPI000005EC43 | Symbol:emb1220 | SEG:seg | : |
Description
PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
Coordinates
chr1:+:22192758..22195400
Molecular Weight (calculated)
52647.9 Da
IEP (calculated)
5.472
GRAVY (calculated)
-0.393
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.