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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER90152
EER93483
EER95217
EER95568
EER99370
EES00250
EES05410
EES08023
EES09632
EES11600
EES12225
EES12723
EES15709
EES18362
EES19739
KXG20919
KXG22254
KXG26586
KXG30050
KXG30293
KXG33568
KXG36804
KXG38992
KXG40187
OQU80908
OQU81440
OQU83613
OQU85258

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G20590.1 EER95217 AT4G19210.1 20706207
AT1G20590.1 KXG30050 AT4G19210.1 20706207
AT1G20610.1 EES05410 AT1G19520.1 20706207
AT1G20610.1 EES08023 AT1G43700.1 20706207
AT1G20610.1 EES15709 AT1G43700.1 20706207
AT1G20610.1 EER93483 AT1G56290.1 20706207
AT1G20610.1 EES12225 AT1G71380.1 20706207
AT1G20610.1 KXG40187 AT2G27960.1 20706207
AT1G20610.1 EES11600 AT3G11270.1 20706207
AT1G20610.1 KXG30293 AT5G07300.1 20706207
AT1G20610.1 OQU81440 AT5G13330.1 20706207
AT1G20610.1 KXG36804 AT5G14170.1 20706207
AT2G17620.1 EER90152 AT1G76540.1 12857813
AT2G17620.1 OQU80908 AT1G76540.1 12857813
AT4G35620.1 EES18362 AT1G07820.1 20706207
AT4G35620.1 EES12225 AT1G71380.1 20706207
AT4G35620.1 EER95568 AT3G45970.1 20706207
AT4G35620.1 EER99370 AT3G45970.1 20706207
AT4G35620.1 KXG20919 AT3G45970.1 20706207
AT4G35620.1 KXG38992 AT3G45970.1 20706207
AT4G35620.1 EES00250 AT3G46320.1 20706207
AT4G35620.1 EES12723 AT3G53730.1 20706207
AT4G35620.1 EES09632 AT3G56690.1 20706207
AT4G35620.1 KXG26586 AT4G24820.1 20706207
AT4G35620.1 OQU85258 AT4G24820.1 20706207
AT4G35620.1 EES19739 AT5G12140.1 20706207
AT4G35620.1 KXG22254 AT5G12140.1 20706207
AT4G35620.1 KXG33568 AT5G12140.1 20706207
AT4G35620.1 OQU83613 AT5G38480.1 20706207
AT4G35620.1 EES00250 AT5G59970.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d026129_P001 Maize nucleus 88.89 90.14
TraesCS2A01G404800.1 Wheat nucleus 69.21 73.83
Os04t0563700-01 Rice mitochondrion 71.53 73.57
TraesCS2B01G422800.1 Wheat nucleus 69.44 73.35
TraesCS2D01G401700.1 Wheat nucleus, plastid 69.44 71.26
PGSC0003DMT400075380 Potato nucleus 37.27 67.93
CDY31481 Canola nucleus 33.56 66.82
GSMUA_Achr5P19270_001 Banana cytosol 32.87 65.44
HORVU2Hr1G096070.2 Barley nucleus 67.82 62.21
GSMUA_Achr8P13320_001 Banana nucleus 55.32 56.9
GSMUA_Achr11P... Banana nucleus 53.24 56.37
GSMUA_Achr5P19110_001 Banana nucleus 53.47 54.48
VIT_18s0001g14170.t01 Wine grape nucleus 54.86 53.74
KRH28901 Soybean nucleus 53.24 53.12
KRH76553 Soybean nucleus 53.01 53.01
Solyc04g082430.2.1 Tomato nucleus 48.15 52.93
KXG20945 Sorghum nucleus 51.62 52.59
Bra003727.1-P Field mustard nucleus 46.53 52.48
CDX85942 Canola nucleus 49.31 52.21
CDY33634 Canola nucleus 49.07 51.96
Bra016460.1-P Field mustard nucleus 49.31 51.95
CDX96631 Canola nucleus 49.07 51.71
CDY67210 Canola nucleus 48.38 51.48
CDX72551 Canola nucleus 47.69 51.37
Bra017726.1-P Field mustard nucleus 48.15 51.23
VIT_03s0038g02800.t01 Wine grape nucleus, plastid 50.23 51.18
AT1G20610.1 Thale cress nucleus 50.46 50.82
PGSC0003DMT400048062 Potato nucleus 50.69 50.81
Bra025831.1-P Field mustard nucleus 48.15 50.73
Solyc03g032190.2.1 Tomato nucleus 50.46 50.58
CDX68105 Canola nucleus 45.83 50.13
Bra024504.1-P Field mustard nucleus 48.61 50.12
CDY29184 Canola nucleus 48.61 50.12
Solyc12g094600.1.1 Tomato nucleus 49.31 50.12
AT4G35620.1 Thale cress nucleus 49.77 50.12
CDY07838 Canola nucleus 48.38 50.0
PGSC0003DMT400025854 Potato nucleus 50.93 49.89
CDY29520 Canola nucleus 47.22 49.76
PGSC0003DMT400093973 Potato nucleus 37.96 49.7
Bra015762.1-P Field mustard nucleus 49.54 49.65
CDY26816 Canola nucleus 46.76 49.63
Solyc02g061650.1.1 Tomato nucleus 40.28 49.57
AT1G20590.1 Thale cress cytosol, golgi, nucleus, plastid 30.32 49.43
PGSC0003DMT400003868 Potato nucleus 49.54 49.42
CDX87612 Canola nucleus 49.31 49.42
KRH60628 Soybean nucleus 46.3 49.38
CDX88261 Canola nucleus 49.07 49.3
CDY30357 Canola nucleus 46.3 48.9
AT2G17620.1 Thale cress nucleus 48.38 48.72
KRH51329 Soybean nucleus, plastid 46.76 48.67
Bra037265.1-P Field mustard nucleus 46.06 48.66
Solyc02g082820.2.1 Tomato nucleus 48.84 48.62
AT1G76310.3 Thale cress nucleus 50.69 47.71
KXG24389 Sorghum nucleus 21.76 37.3
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 54.86 35.48
OQU91386 Sorghum nucleus 20.83 34.48
EES02793 Sorghum nucleus 35.42 33.05
EES03772 Sorghum nucleus, plastid 34.26 32.96
EES18429 Sorghum mitochondrion 31.94 30.0
EER95303 Sorghum nucleus, plastid 22.45 25.46
OQU77084 Sorghum nucleus 28.24 25.0
KXG21616 Sorghum nucleus, plastid 26.62 24.01
KXG23504 Sorghum mitochondrion, nucleus 25.0 22.36
EES16237 Sorghum nucleus, plastid 21.99 22.2
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2EntrezGene:8057580UniProt:C5YDZ8InterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_C-domInterPro:Cyclin_NEnsemblPlants:EES12664ProteinID:EES12664ProteinID:EES12664.1GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF350SMART:SM00385SMART:SM01332EnsemblPlantsGene:SORBI_3006G179200
SUPFAM:SSF47954unigene:Sbi.21062UniParc:UPI0001A87698RefSeq:XP_002448336.1::
Description
hypothetical protein
Coordinates
chr6:-:53348887..53352760
Molecular Weight (calculated)
48455.3 Da
IEP (calculated)
5.258
GRAVY (calculated)
-0.334
Length
432 amino acids
Sequence
(BLAST)
001: MAARAADENR RPAAGGKPAP GVREMGSRRA LTEIKNLVGV APYPCAVAKK PTLQKSRRDE KKTTLLPSSR PMTRKFAASL ASKGQPECQP ILTECQPILT
101: DPEPGVDQQK ESIGDGTVDI DVEIHELVDD SDSDIDMGET ENKEMNQDEP LMDIDRADSG NPLAATEYVE ELYKFYRENE AKSCVRPDYM SSQQDINSKM
201: RAILIDWLIE VHYKFDLMDE TLFLTVNIID RFLDKEVVPR KKLQLVGVTA MLLACKYEEV SVPVVEDLVL ISDRAYTKGQ ILEMEKLILN TLQFNMSVPT
301: PYVFMKRFLK AADADKQLEL VSFFMLELCL VEYQMLNYQP SHLAAAAVYT AQCAINRCPH WTKVCESHSR YTSDQLLECS RMMVDFHQKA GTGKLTGVHR
401: KYSTYKFGCA AKTLPAQFLL ESGGTPPPSG AI
Best Arabidopsis Sequence Match ( AT1G76310.1 )
(BLAST)
001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L
Arabidopsis Description
CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.