Factsheet for Solyc04g082430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g009620.2.1
Solyc01g009630.2.1
Solyc02g068100.2.1
Solyc03g025880.2.1
Solyc03g118200.2.1
Solyc04g071160.2.1
Solyc06g060490.2.1
Solyc06g068840.2.1
Solyc07g008340.2.1
Solyc07g025200.1.1
Solyc07g025210.1.1
Solyc07g025230.1.1
Solyc08g075360.1.1
Solyc09g083420.2.1
Solyc11g040340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	Solyc07g008340.2.1	AT4G19210.1	20706207
AT1G20590.1	Solyc08g075360.1.1	AT4G19210.1	20706207
AT1G20590.1	Solyc01g009620.2.1	AT4G25550.1	20706207
AT1G20590.1	Solyc01g009630.2.1	AT4G25550.1	20706207
AT1G20590.1	Solyc03g025880.2.1	AT4G25550.1	20706207
AT1G20610.1	Solyc07g025200.1.1	AT1G19520.1	20706207
AT1G20610.1	Solyc07g025210.1.1	AT1G19520.1	20706207
AT1G20610.1	Solyc07g025230.1.1	AT1G19520.1	20706207
AT1G20610.1	Solyc04g071160.2.1	AT1G43700.1	20706207
AT1G20610.1	Solyc06g060490.2.1	AT1G43700.1	20706207
AT1G20610.1	Solyc09g083420.2.1	AT1G56290.1	20706207
AT1G20610.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT1G20610.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT1G20610.1	Solyc03g118200.2.1	AT5G07300.1	20706207
AT1G20610.1	Solyc06g068840.2.1	AT5G07300.1	20706207
AT1G20610.1	Solyc02g068100.2.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025854	Potato	nucleus	96.95	86.39
CDY31481	Canola	nucleus	38.93	70.51
Solyc12g094600.1.1	Tomato	nucleus	72.26	66.82
VIT_18s0001g14170.t01	Wine grape	nucleus	70.48	62.81
CDX85942	Canola	nucleus	63.87	61.52
GSMUA_Achr5P19270_001	Banana	cytosol	33.84	61.29
Bra003727.1-P	Field mustard	nucleus	58.27	59.79
Bra015762.1-P	Field mustard	nucleus	65.14	59.4
CDY33634	Canola	nucleus	61.58	59.31
Bra016460.1-P	Field mustard	nucleus	61.83	59.27
CDX87612	Canola	nucleus	64.89	59.16
CDX88261	Canola	nucleus	64.63	59.07
CDX96631	Canola	nucleus	61.58	59.02
CDX68105	Canola	nucleus	59.03	58.73
AT1G20610.1	Thale cress	nucleus	62.85	57.58
Solyc03g032190.2.1	Tomato	nucleus	62.34	56.84
Os06t0726800-01	Rice	nucleus	60.31	56.56
GSMUA_Achr11P...	Banana	nucleus	58.52	56.37
CDY29520	Canola	nucleus	58.78	56.34
Bra025831.1-P	Field mustard	nucleus	58.78	56.34
AT1G76310.3	Thale cress	nucleus	65.65	56.21
KRH60628	Soybean	nucleus	57.76	56.05
GSMUA_Achr8P13320_001	Banana	nucleus	59.03	55.24
KXG20945	Sorghum	nucleus	59.54	55.19
Zm00001d036360_P002	Maize	nucleus	59.29	54.95
KRH51329	Soybean	nucleus, plastid	58.02	54.94
TraesCS7A01G549500.1	Wheat	nucleus	58.02	54.42
HORVU7Hr1G121820.6	Barley	nucleus	57.76	54.05
HORVU0Hr1G022770.1	Barley	nucleus, plastid	37.91	53.6
TraesCS7D01G536000.1	Wheat	nucleus	57.0	53.46
GSMUA_Achr5P19110_001	Banana	nucleus	57.25	53.07
Solyc02g082820.2.1	Tomato	nucleus	58.52	53.0
TraesCS7B01G472800.1	Wheat	nucleus	56.49	52.98
TraesCS2A01G404800.1	Wheat	nucleus	53.94	52.35
TraesCS2B01G422800.1	Wheat	nucleus	54.45	52.32
TraesCS2D01G401700.1	Wheat	nucleus, plastid	54.96	51.31
Os04t0563700-01	Rice	mitochondrion	54.2	50.71
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	33.84	50.19
Solyc02g061650.1.1	Tomato	nucleus	44.78	50.14
Zm00001d026129_P001	Maize	nucleus	53.18	49.06
EES12664	Sorghum	nucleus	52.93	48.15
Zm00001d002662_P010	Maize	nucleus	52.93	45.71
HORVU2Hr1G096070.2	Barley	nucleus	53.94	45.01
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	58.52	34.43
Solyc10g080950.1.1	Tomato	nucleus	38.68	32.9
Solyc01g009040.2.1	Tomato	nucleus	36.39	32.87
Solyc10g078330.1.1	Tomato	nucleus	34.35	31.91
Solyc06g073610.2.1	Tomato	nucleus	34.61	30.91
Solyc04g078310.2.1	Tomato	nucleus	27.48	29.11
Solyc12g088530.1.1	Tomato	nucleus	25.45	28.25
Solyc12g088520.1.1	Tomato	nucleus	25.45	28.17
Solyc12g088470.1.1	Tomato	nucleus	25.7	28.06
Solyc12g088500.1.1	Tomato	nucleus	24.94	27.68
Solyc10g049360.1.1	Tomato	nucleus	24.43	25.4
Solyc06g065680.2.1	Tomato	nucleus, plastid	29.01	24.0
Solyc03g120440.1.1	Tomato	nucleus, plastid	27.74	23.8
Solyc11g005090.1.1	Tomato	plastid	29.01	23.27
Solyc07g066660.2.1	Tomato	nucleus	34.61	18.4

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4BVX0
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF350
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc04g082430.2	EnsemblPlants:Solyc04g082430.2.1	UniParc:UPI0002766685
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:66085750..66088898

Molecular Weight (calculated)

45031.8 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.097

Length

393 amino acids

Sequence
(BLAST)

001: MGAPPLHCAV VHKRNDITEN KASAANKIPP VPIHRPITRK LAAQIASKQH QPAVEVTKPP VPVVPVRNES EDCIIIDAED YKTTGNSSVP MFVQHTEAMM
101: EEIDRMDEEI EMEDAEDWSI VDIDSPDKKN SLAVVEYIDD IYAYYKKSEI VSCVPPNYME QQFDINERMR GILIDWLIEV HYKFELMEET LYLTVNLIDR
201: FLAVQSVIRK KLQLVGITAM LLACKYEEVT VPVVEDLILI SDRAYTRKEV LEMEKLMVNT LQFNMTVPTV YAFMRRFLKA AQSDKKVELV SFFLIELCLV
301: EYEMLRFPPS MLAAAAIFTA QCTLGVSKEW NKTCEKHSSY VKDQLLECSK LMVCFHQKAA IGKLTGVHRK YSTSKYGYAT RCEPASFLLE AWF

Best Arabidopsis Sequence Match ( AT1G76310.1 )
(BLAST)

001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L

Arabidopsis Description

CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.