Factsheet for Solyc07g025210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013736	Potato	cytosol	66.49	39.68
GSMUA_AchrUn_...	Banana	cytosol	14.1	30.46
VIT_18s0001g12630.t01	Wine grape	mitochondrion	49.73	25.97
KRH05834	Soybean	mitochondrion	46.81	25.4
KRH15184	Soybean	mitochondrion	45.48	24.75
CDY29423	Canola	mitochondrion	43.09	22.56
Bra025746.1-P	Field mustard	mitochondrion	42.82	22.42
CDY39372	Canola	mitochondrion	39.36	21.54
AT1G19520.1	Thale cress	mitochondrion	41.49	21.52
GSMUA_Achr2P23090_001	Banana	cytosol	13.03	21.21
GSMUA_Achr3P14510_001	Banana	mitochondrion	37.77	20.0
TraesCS6A01G219800.1	Wheat	mitochondrion	30.59	17.16
TraesCS6B01G249200.1	Wheat	mitochondrion	30.59	17.16
TraesCS6D01G202700.1	Wheat	mitochondrion	30.59	17.16
Zm00001d017185_P001	Maize	mitochondrion	30.32	16.94
HORVU6Hr1G056180.2	Barley	mitochondrion	30.32	16.91
Os02t0611400-01	Rice	mitochondrion	30.59	16.84
EES05410	Sorghum	mitochondrion	30.05	16.57
Solyc01g091450.2.1	Tomato	plastid	6.38	5.78
Solyc07g025200.1.1	Tomato	cytosol	0.0	0.0
Solyc07g025230.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc07g025210.1.1	EnsemblPlantsGene:Solyc07g025210.1	PANTHER:PTHR24015	PANTHER:PTHR24015:SF515	SEG:seg	UniParc:UPI000276ABFD
UniProt:K4CD72	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr7:-:26689621..26690748

Molecular Weight (calculated)

43747.9 Da

IEP (calculated)

7.530

GRAVY (calculated)

-0.491

Length

376 amino acids

Sequence
(BLAST)

001: MNMKQLMSKR TIEKLSKLKA TQILCHFHSK SSIPTSSLPP STSWTKCRFF LIHNTPIPKF ESWSAKRLIH TDTVTDTPEE MVIDTEDDIT MNDFLSRFVW
101: IMRGKLKQVY PDFEKKTIDE MLLVIVDKVV SELEKGGFDQ IVGGKSSDDD FSHDLWKTVW EVSNVVLEDM EKAKRKDKMK NFLQAEQVKE MCRFAGEVGI
201: RGDMLREYRF KWAREKMEAS EFYHSLERFK EEEQQQQGTE HGIGAEDPKL VTLPKRRGKI NYKIYGLDLS DSKWSQVADK IHEAEKIICP QEPKKIDGKC
301: KIITEKLLSL QEEDDYSTLI AEWVQLLQPS RVDWINLLDR LQNRNPSLYL KVIRSPIKCF LISMTSISIF IFNFXX

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.