CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29423	Canola	mitochondrion	90.39	86.49
AT1G19520.1	Thale cress	mitochondrion	75.98	72.0
PGSC0003DMT400038307	Potato	cytosol	13.97	57.83
Solyc07g025230.1.1	Tomato	cytosol	24.89	55.16
Solyc07g025200.1.1	Tomato	cytosol	24.6	54.52
PGSC0003DMT400013736	Potato	cytosol	48.62	53.02
VIT_18s0001g12630.t01	Wine grape	mitochondrion	52.11	49.72
KRH05834	Soybean	mitochondrion	49.64	49.21
KRH15184	Soybean	mitochondrion	49.05	48.77
GSMUA_Achr3P14510_001	Banana	mitochondrion	44.25	42.82
TraesCS6A01G219800.1	Wheat	mitochondrion	40.61	41.64
TraesCS6B01G249200.1	Wheat	mitochondrion	40.47	41.49
TraesCS6D01G202700.1	Wheat	mitochondrion	40.32	41.34
Os02t0611400-01	Rice	mitochondrion	40.17	40.41
HORVU6Hr1G056180.2	Barley	mitochondrion	39.45	40.21
Solyc07g025210.1.1	Tomato	plastid	21.54	39.36
EES05410	Sorghum	mitochondrion	38.57	38.86
Zm00001d017185_P001	Maize	mitochondrion	37.12	37.89
GSMUA_Achr2P23090_001	Banana	cytosol	11.5	34.2
GSMUA_AchrUn_...	Banana	cytosol	8.44	33.33
CDY15139	Canola	plastid	18.49	31.99
CDX90067	Canola	plastid	18.49	31.51

Protein Annotations

EnsemblPlants:CDY39372	EnsemblPlantsGene:GSBRNA2T00067821001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF515	PFAM:PF13812	PFAM:PF17177	PFscan:PS51375	ProteinID:CDY39372	ProteinID:CDY39372.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EE7AA6	UniProt:A0A078HNB1	MapMan:35.1	:

Description

BnaC05g15150DBnaC05g15150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNB1]

Coordinates

chrLK032446:-:263802..266377

Molecular Weight (calculated)

78286.4 Da

IEP (calculated)

5.579

GRAVY (calculated)

-0.555

Length

687 amino acids

Sequence
(BLAST)

001: MKSLLLSRQA IRRISLSSSK PQPFRRNFSA ATPSISRSDR HLRSYDEPIP RPVSSSLTRH FHSTRESRLT ASSQIHDEDE EEEDGTTNEF LSRFVWIMRG
101: KVSEAFPDSD KKMVDGMLLL IVEKVGGSSS SAAPPPSPSS EFSDDLWATI WEVSNTVLKD MYKERKKEKM KVYVQSPEVM EMCRFAGEIG IRGDLLRELR
201: FTWARDKMEE AEFNESLEQM RDLDTSIRDS ETMADEEGED VSVRKGKFKY KIYGLELSDP KWGEVADKIH EAEEEADWRE AKPVTGKCKL VMEKLESLEE
301: KDDPSGLIAE WVELLEPQRV DWIALLDQLR EANTNAYLKV AEHVLEDKSF RASISDYSKL IHFHAKENHT EDVERILKKM SQNGIFPDIS IATALIHLYS
401: KSGNLERATE AFESLKSYGL RPDNKIYTSM IMGYVNAGKP KLGERLMRDM EARDMKCSDE VYMAMLRAFA QTGDADGAAG IFNSMQDTNC FEAYGLLVEA
501: YGRAGKADKA KINFDQMRTR GFKPDDKCIA NMIRAYKREN SLDKALRLLL QLEKDGIEIG VITYTVLVDW MATLGLIEEA EQLLVKISQL GEAPPFELQV
601: SLCYMYSTAR NEKKTLQALG VLEAKRDQMG PNEFERVITG LKTGGFEKDA RRMFKHMEAR KFLPSDRLKI DMGASPSFGS GFNRVRR

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.