Factsheet for GSMUA_Achr2P23090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	41.56	55.17
GSMUA_Achr3P14510_001	Banana	mitochondrion	58.01	18.87
EES05410	Sorghum	mitochondrion	45.89	15.54
Os02t0611400-01	Rice	mitochondrion	45.45	15.37
TraesCS6B01G249200.1	Wheat	mitochondrion	44.16	15.22
TraesCS6A01G219800.1	Wheat	mitochondrion	44.16	15.22
TraesCS6D01G202700.1	Wheat	mitochondrion	43.72	15.07
Zm00001d017185_P001	Maize	mitochondrion	43.72	15.01
HORVU6Hr1G056180.2	Barley	mitochondrion	43.72	14.99
GSMUA_Achr11P...	Banana	cytosol	22.51	14.86
PGSC0003DMT400013736	Potato	cytosol	40.26	14.76
VIT_18s0001g12630.t01	Wine grape	mitochondrion	43.29	13.89
Solyc07g025210.1.1	Tomato	plastid	21.21	13.03
CDY39372	Canola	mitochondrion	34.2	11.5
AT1G19520.1	Thale cress	mitochondrion	35.5	11.31
KRH15184	Soybean	mitochondrion	33.77	11.29
KRH05834	Soybean	mitochondrion	33.77	11.26
CDY29423	Canola	mitochondrion	34.2	11.0
Bra025746.1-P	Field mustard	mitochondrion	34.2	11.0
PGSC0003DMT400038307	Potato	cytosol	7.79	10.84
Solyc07g025200.1.1	Tomato	cytosol	11.26	8.39
Solyc07g025230.1.1	Tomato	cytosol	11.26	8.39

Protein Annotations

EnsemblPlants:GSMUA_Achr2P23090_001	EnsemblPlants:GSMUA_Achr2T23090_001	EnsemblPlantsGene:GSMUA_Achr2G23090_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF515	PFscan:PS51375	TIGRFAMs:TIGR00756	UniParc:UPI000296C672	UniProt:M0SAF0	MapMan:35.2

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G23090_001]

Coordinates

chr2:-:21909260..21912504

Molecular Weight (calculated)

26249.4 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.647

Length

231 amino acids

Sequence
(BLAST)

001: MREQAQKQED RQKGAVAAFP QRKGKFKYTI YGLDFSDPQM GGDGIKVAEA EKHFVPEELH PVEEKCNEIE DRILSLKAKR DDLPPLVADR KEFLQPKRLA
101: LLDRIKERNV DLYLKVTELL LTMESFETGI RDYSKLIDAH GKVDYFKDAE RILQKMTESG IVPDILTSLV LVHTYSKARK EGLQINDCSL CEGWPPKARG
201: GTGEGNGVER HEIHERDIHG ALESIHGAWP S

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.