Factsheet for Os02t0611400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G249200.1	Wheat	mitochondrion	68.67	70.0
TraesCS6A01G219800.1	Wheat	mitochondrion	68.23	69.55
TraesCS6D01G202700.1	Wheat	mitochondrion	68.08	69.4
HORVU6Hr1G056180.2	Barley	mitochondrion	67.94	68.84
EES05410	Sorghum	mitochondrion	66.03	66.13
Zm00001d017185_P001	Maize	mitochondrion	63.4	64.34
PGSC0003DMT400038307	Potato	cytosol	12.01	49.4
GSMUA_Achr3P14510_001	Banana	mitochondrion	49.63	47.75
GSMUA_Achr2P23090_001	Banana	cytosol	15.37	45.45
Solyc07g025230.1.1	Tomato	cytosol	20.06	44.19
Solyc07g025200.1.1	Tomato	cytosol	19.77	43.55
PGSC0003DMT400013736	Potato	cytosol	39.24	42.54
VIT_18s0001g12630.t01	Wine grape	mitochondrion	43.48	41.25
GSMUA_AchrUn_...	Banana	cytosol	10.4	40.8
CDY39372	Canola	mitochondrion	40.41	40.17
KRH05834	Soybean	mitochondrion	39.82	39.25
KRH15184	Soybean	mitochondrion	39.68	39.22
Bra025746.1-P	Field mustard	mitochondrion	41.14	39.14
CDY29423	Canola	mitochondrion	41.14	39.14
AT1G19520.1	Thale cress	mitochondrion	38.65	36.41
Solyc07g025210.1.1	Tomato	plastid	16.84	30.59
Os07t0661900-01	Rice	plastid	15.81	24.55

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4329957	EMBL:AK101310	ProteinID:BAD19233.1	ProteinID:BAD19678.1
ProteinID:BAF09320.1	ProteinID:BAS79720.1	ProteinID:EEE57357.1	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0016787
GO:GO:0030154	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os02g0611400
EnsemblPlants:Os02t0611400-01	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF515
InterPro:Pentatricopeptide_repeat	UniProt:Q6K643	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00003757E0	RefSeq:XP_015624700.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os02t0611400-01)

Coordinates

chr2:+:24059319..24062693

Molecular Weight (calculated)

76536.1 Da

IEP (calculated)

6.970

GRAVY (calculated)

-0.325

Length

683 amino acids

Sequence
(BLAST)

001: MRALISLSKL TRRLLPSLAV ARAPLPPLRR CLHAEPPPPP HHAPPPVASR ILQSELTPGA GADADAEQEQ QPAPDPLLDE FLARFVAALR PTLAAAFPTH
101: ARHVLDEMLR LVAEAVLCRL TGVEPEEGGA VELSDDLWAA VWEVSAAVRD GMQRDRVRAE LRGYLHCEEV KEMTRFASDV GIRGEMLREL RFKWAREKLE
201: EVEFYRGLDD MRAQAEAAAN PVALPPPRLA ALPQRKGEIK FKIHGLDLSD PTWGEVVERA AEAEAHFVPQ EAKPIEGKAK KAEEKLMAVD PRKGDPAPAM
301: EEWKEELLPK RADWMALLER LKARNVELYL KVAEILLADE SFGATIRDYS KLIDLHSKAN HVEDAERILG KMKENGIAPD VVTSITLVHM YCKVGNLEQA
401: NQAFQFLKGE GFPPDMKLFT SMIRAHLKSG EPKQAENLLR EMERSIKPTK ELFMDVILAF AQRGMIDGAE RVKTSMLLAG FQLTPELYTS LIEAYGRGGH
501: VGQAYTLFEQ MRSSGHEPDD RCVAGMMVAY MMKNQLDHAL SFLLKLEKDG LKPGVKTNLV LLDWLSRLQL VQEAEQVVQK IRKAGEEPLE MHVFLADMYA
601: KSQQEERTRK SLKILEEKKK LLKAYHFERI IAGLLEGGFT EEANKYFKMM KSHGFVPSPT IEIGVKASFG VRGGVHPTGR HRG

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.