CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017185_P001	Maize	mitochondrion	84.9	86.03
TraesCS6B01G249200.1	Wheat	mitochondrion	67.45	68.66
TraesCS6D01G202700.1	Wheat	mitochondrion	67.16	68.36
TraesCS6A01G219800.1	Wheat	mitochondrion	67.16	68.36
HORVU6Hr1G056180.2	Barley	mitochondrion	66.42	67.21
Os02t0611400-01	Rice	mitochondrion	66.13	66.03
PGSC0003DMT400038307	Potato	cytosol	11.29	46.39
GSMUA_Achr3P14510_001	Banana	mitochondrion	48.24	46.34
GSMUA_Achr2P23090_001	Banana	cytosol	15.54	45.89
Solyc07g025230.1.1	Tomato	cytosol	19.94	43.87
Solyc07g025200.1.1	Tomato	cytosol	19.79	43.55
PGSC0003DMT400013736	Potato	cytosol	39.15	42.38
GSMUA_AchrUn_...	Banana	cytosol	10.41	40.8
VIT_18s0001g12630.t01	Wine grape	mitochondrion	40.91	38.75
CDY39372	Canola	mitochondrion	38.86	38.57
CDY29423	Canola	mitochondrion	39.59	37.6
Bra025746.1-P	Field mustard	mitochondrion	39.59	37.6
AT1G19520.1	Thale cress	mitochondrion	39.44	37.1
KRH15184	Soybean	mitochondrion	37.54	37.05
KRH05834	Soybean	mitochondrion	37.54	36.94
Solyc07g025210.1.1	Tomato	plastid	16.57	30.05
EER99862	Sorghum	plastid	16.28	27.41

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8059671	UniProt:C5XXB5	ncoils:Coil	EnsemblPlants:EES05410
ProteinID:EES05410	ProteinID:EES05410.1	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0016787	GO:GO:0030154
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF515	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G212100	unigene:Sbi.7808
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A852D7	RefSeq:XP_002452434.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:56181217..56186188

Molecular Weight (calculated)

77368.6 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.356

Length

682 amino acids

Sequence
(BLAST)

001: MRALLSLSRL ARRVPASLAP VSAPTTFLLR HIHADVPPPP PPPPPHDSPL FVSRILESEP SLTPNAESEP ASDPILDEFL ARFVAAFRPR LTAAFPNHDR
101: DVLDEMLRLV ADAVLCRLTG ADRGPDAIEL NDDLWAVVWE VSASVREAMR RDQVRADLRQ YLHCDEVKEM TRFAVDVGIR GAMLRELRFK WAREKLDEVE
201: FYRGLDDKRS DAEAAADPAP APVPRLTALP KRKGEVKFTM YGLDMSDPKW AEVAERVAEA EAHFVPEEAK AVEGRAKKAE ERLLLVDPRR GDPVPAIEEW
301: KEDLRPKRVD WIALLERIKA RNVELYLKVA EILLDQESFE ANIRDYSKLI DLHAKANHVE SAERVLGKMK EKGIAPDVIT SIVLVHMYSK AGNLEQAKEA
401: FEFIRREGFK PDLKLFSSMI NCYINHGEPE EAENLIKSMR GTRVIVKPTR EIYTDIVRAY AQRGMMTCAQ RVLNMMTHDE IKPTEELYAI CIEAYGRIGD
501: PIQARAMFDQ IRRRLGHEPG DSSIAGVVAA HIEKNQLDEA LQWLLSLEKE GVELGVKTNL VLLDWLSMLQ LVLEAEQLVQ KIKKLGEEPI EVHVFLAGMY
601: AKSRQEEKAR RSLKILEEKK KLLKSDQFER VIRGLLDGGF SEEANKYYKM MKSCGFEPSE TIEVGVKASL RIRGASRHIG RH

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.