CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022514_P001	Maize	plastid	86.67	84.99
Os07t0661900-01	Rice	plastid	72.84	67.05
HORVU2Hr1G022100.1	Barley	plastid	69.88	62.33
TraesCS2D01G128400.1	Wheat	plastid	70.37	61.29
TraesCS2A01G125300.1	Wheat	plastid	69.88	60.86
GSMUA_Achr11P...	Banana	cytosol	51.85	60.0
TraesCS2B01G147800.1	Wheat	plastid	69.38	59.41
VIT_15s0048g00820.t01	Wine grape	cytosol	39.26	58.03
PGSC0003DMT400033219	Potato	cytosol	47.65	46.51
Solyc01g091450.2.1	Tomato	plastid	47.65	46.51
KRH00579	Soybean	cytosol	47.41	46.38
KRH40587	Soybean	cytosol	46.67	45.54
AT1G01970.1	Thale cress	mitochondrion	44.69	44.25
Bra033224.1-P	Field mustard	plastid	43.21	43.42
CDX90067	Canola	plastid	42.96	43.18
CDY15139	Canola	plastid	42.22	43.07
VIT_15s0048g00810.t01	Wine grape	cytosol	9.63	40.21
EES05410	Sorghum	mitochondrion	27.41	16.28

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8073145	UniProt:C5X4T3	ncoils:Coil	EnsemblPlants:EER99862
ProteinID:EER99862	ProteinID:EER99862.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G406400	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A84763	RefSeq:XP_002463341.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:75592984..75594830

Molecular Weight (calculated)

44781.6 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.038

Length

405 amino acids

Sequence
(BLAST)

001: MASLAITKLA STITPTNPWK PACQCACVSG GHGRESSALA AEAETEQAAV SEARPRFRWD AFGSEMSESQ QRAVRGLSPK LPNRCKALVA RVVCLCPGDE
101: SLGALLAYWV KAMKPKRADW LLVLKELKAM ESPLLAEVLQ HALLENSFEA NVRDYTKLIH IYGKQKLLQK AEDAFAAMKG RGFPCDQVML TALMDMYSKA
201: GDLTRAKEIF REIVLLGLPL DKRAYGSMIM AYIRADMLQE AEGLIKEMED QQMFAGKEVY KALLRAYSYR GDSDGAQRIF DAIQFAGIVP DTKLCALLVN
301: AYCLSNRIDE AVCVIRNMRC AGVKPCDKCI ALVLGAYEKV NMLETALEFL TELEEKGVSI GQEPSQLLAA WFRKLGVVHE VEQVLKDLSS EDMTSKPSFA
401: VSLEQ

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.