Factsheet for PGSC0003DMT400033219

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091450.2.1	Tomato	plastid	95.18	95.18
VIT_15s0048g00820.t01	Wine grape	cytosol	44.1	66.79
GSMUA_Achr11P...	Banana	cytosol	47.23	56.0
KRH00579	Soybean	cytosol	53.25	53.38
KRH40587	Soybean	cytosol	53.01	53.01
VIT_15s0048g00810.t01	Wine grape	cytosol	12.29	52.58
Bra033224.1-P	Field mustard	plastid	50.12	51.61
CDX90067	Canola	plastid	49.88	51.36
AT1G01970.1	Thale cress	mitochondrion	50.36	51.1
CDY15139	Canola	plastid	47.71	49.87
EER99862	Sorghum	plastid	46.51	47.65
Zm00001d022514_P001	Maize	plastid	46.27	46.49
Os07t0661900-01	Rice	plastid	45.06	42.5
TraesCS2A01G125300.1	Wheat	plastid	46.27	41.29
TraesCS2D01G128400.1	Wheat	plastid	45.78	40.86
HORVU2Hr1G022100.1	Barley	plastid	44.34	40.53
TraesCS2B01G147800.1	Wheat	plastid	45.3	39.75
PGSC0003DMT400038307	Potato	cytosol	11.08	27.71
PGSC0003DMT400013736	Potato	cytosol	29.64	19.52

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102581801	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1AYR9	PFAM:PF13812	PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG400012755
PGSC:PGSC0003DMG400012755	EnsemblPlants:PGSC0003DMT400033219	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029672E5	RefSeq:XP_006339440.1	SEG:seg

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012755]

Coordinates

chr1:-:70817739..70824044

Molecular Weight (calculated)

46552.0 Da

IEP (calculated)

8.123

GRAVY (calculated)

-0.075

Length

415 amino acids

Sequence
(BLAST)

001: MGFVASDVLC CSTQTSILNN TIGRIHQYPL KGVFFLQKVA IFENRELGFR PLLAVSNVAV HQKGSAENQV NDKPRYKWVK IGSDVTEEQQ RAILKLPPKM
101: INRCKALMQQ IICYSPEKGS VSLLLEAWVK SMKPERADWL AVLKELDRLN HPMYLEVAEL SLLAESFEAN IRDYTKIIHG YAKQNRLKEA ESVFLSMKSR
201: GFTCDQVTLT ALVHMYSKAG NLKLAEDTFE EMRLLGVPLD KRSFGSIIMA YVRAGKLGQG EALLKEMEEQ EIYAGPEVYK ALLRAYSMSG DSKGAQRVFD
301: TTQLAGVIPD ATICGLLMNA YIMAGQLSEA CITFENMRRV GIKPNDKCIT LLLKAYETEN KLSKALDVLM DLERDGVVLG REASELLARW FKRLGVVGEV
401: ELVLRDYASN CALLN

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.