Factsheet for Os07t0661900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99862	Sorghum	plastid	67.05	72.84
Zm00001d022514_P001	Maize	plastid	64.77	69.01
HORVU2Hr1G022100.1	Barley	plastid	66.82	64.76
TraesCS2D01G128400.1	Wheat	plastid	66.14	62.58
TraesCS2A01G125300.1	Wheat	plastid	65.23	61.72
TraesCS2B01G147800.1	Wheat	plastid	65.91	61.31
GSMUA_Achr11P...	Banana	cytosol	46.59	58.57
VIT_15s0048g00820.t01	Wine grape	cytosol	35.0	56.2
PGSC0003DMT400033219	Potato	cytosol	42.5	45.06
Solyc01g091450.2.1	Tomato	plastid	42.27	44.82
KRH40587	Soybean	cytosol	41.59	44.1
KRH00579	Soybean	cytosol	41.36	43.96
Bra033224.1-P	Field mustard	plastid	40.23	43.92
CDX90067	Canola	plastid	40.0	43.67
AT1G01970.1	Thale cress	mitochondrion	40.45	43.52
CDY15139	Canola	plastid	38.64	42.82
VIT_15s0048g00810.t01	Wine grape	cytosol	8.86	40.21
Os02t0611400-01	Rice	mitochondrion	24.55	15.81

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4344187	EMBL:AK069221	ProteinID:BAC22426.1	ProteinID:BAF22456.1
ProteinID:BAT03064.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os07g0661900	EnsemblPlants:Os07t0661900-01
PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	InterPro:Pentatricopeptide_repeat
UniProt:Q8H2U4	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000AD8E7	RefSeq:XP_015646709.1	RefSeq:XP_015646710.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os07t0661900-01)

Coordinates

chr7:-:27929713..27932769

Molecular Weight (calculated)

49015.8 Da

IEP (calculated)

8.524

GRAVY (calculated)

-0.186

Length

440 amino acids

Sequence
(BLAST)

001: MISLAVPAIY SLTSQFPSAT THARAPSRCA CACVPGRQVA EQPLASMKAE QAAAAAGETP RFRWDTFGSA PSEPQWEAIR GLSPKLPNRC RALMARLVCL
101: PPPDQDGDED EETLGALLVF WVKAMKPKRT DWLLVLKELT AMESPLLAEV LEHALLEDSF EANVRDYTKL IHIYGKQKLL QKAEDAFHAM KSRGLPCDQV
201: MLTALMDMYS KAGDLTRAKE IFNEIGLLGL PMDKRVYGSM IMAYIRADML DKAEDMISEM GDQQIVAGKE VYKALLRAYS YKGDSEGAQR VFDAIQFAGI
301: VPDTKLCALL VNAYCLADRI NEAMIVTRNM RSARITPCNK CIALILGAYE KVNRLEGALA FLTELEENGV IIGQEPSQLL AGWLRRLGVV QEVEQVLKDL
401: AVDRKNTLEV DRKKNLASDR KIKRRRSKSK RSFASSLQRK

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.