Factsheet for Zm00001d022514_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99862	Sorghum	plastid	84.99	86.67
Os07t0661900-01	Rice	plastid	69.01	64.77
HORVU2Hr1G022100.1	Barley	plastid	67.8	61.67
TraesCS2D01G128400.1	Wheat	plastid	68.28	60.65
GSMUA_Achr11P...	Banana	cytosol	51.09	60.29
TraesCS2A01G125300.1	Wheat	plastid	67.8	60.22
TraesCS2B01G147800.1	Wheat	plastid	67.55	58.99
VIT_15s0048g00820.t01	Wine grape	cytosol	37.29	56.2
PGSC0003DMT400033219	Potato	cytosol	46.49	46.27
Solyc01g091450.2.1	Tomato	plastid	46.25	46.02
AT1G01970.1	Thale cress	mitochondrion	44.07	44.5
KRH00579	Soybean	cytosol	44.31	44.2
Bra033224.1-P	Field mustard	plastid	43.1	44.17
KRH40587	Soybean	cytosol	44.31	44.1
CDX90067	Canola	plastid	42.86	43.92
CDY15139	Canola	plastid	41.4	43.07
VIT_15s0048g00810.t01	Wine grape	cytosol	9.93	42.27
Zm00001d017185_P001	Maize	mitochondrion	24.7	15.16

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100191293	MapMan:35.1	UniProt:B4F8A3	EMBL:BT033341	EMBL:BT041670
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM60899.1
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B6358	EnsemblPlantsGene:Zm00001d022514	EnsemblPlants:Zm00001d022514_P001	EnsemblPlants:Zm00001d022514_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr7:+:179172156..179175639

Molecular Weight (calculated)

45311.1 Da

IEP (calculated)

6.191

GRAVY (calculated)

-0.041

Length

413 amino acids

Sequence
(BLAST)

001: MASLAIPALR PAGAKLTGNI TPTNPWRPAR QCACASGGHV GELSALAPEA EAEQAVVSEV KPRFRWDAFG SDLTGPQQRA VRVLSPKLPN RCKALVARVV
101: CLSPGDERLG ALLAYWVKAM KPKRADWLLV LKELKAMESP LLAEVLEHAL LENSFEANVR DYTKLIHIYG KQKRLQKAED AFAAMKGRGF PCDQVMLTAL
201: MDMHSKAGDL ARAKEIFGEI VLLGLPLDKR AYGSMVMAYV RADMLPEAED LIKETEEQQV FAGKEVYKAL LRAYSYRGDP DGAQRVFDAV QFAGIVPDTK
301: LCALLVNAYC LSDRIEEAVC VIRNMRSAGV EPCDKCVALV LGACEKVNML ETALGFLTEL EENGVSIGQE PSQLLAAWFR KLGVVREVDQ VLKDLSSEDM
401: TSRPSFAVSL EQQ

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.