Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 50.52 | 14.0 |
| KRH40587 | Soybean | cytosol | 52.58 | 12.29 |
| PGSC0003DMT400033219 | Potato | cytosol | 52.58 | 12.29 |
| KRH00579 | Soybean | cytosol | 51.55 | 12.08 |
| Solyc01g091450.2.1 | Tomato | plastid | 51.55 | 12.05 |
| Zm00001d022514_P001 | Maize | plastid | 42.27 | 9.93 |
| EER99862 | Sorghum | plastid | 40.21 | 9.63 |
| Os07t0661900-01 | Rice | plastid | 40.21 | 8.86 |
| TraesCS2A01G125300.1 | Wheat | plastid | 39.18 | 8.17 |
| TraesCS2D01G128400.1 | Wheat | plastid | 39.18 | 8.17 |
| HORVU2Hr1G022100.1 | Barley | plastid | 38.14 | 8.15 |
| TraesCS2B01G147800.1 | Wheat | plastid | 39.18 | 8.03 |
| VIT_18s0001g12630.t01 | Wine grape | mitochondrion | 20.62 | 2.78 |
| VIT_15s0048g00820.t01 | Wine grape | cytosol | 1.03 | 0.36 |
Protein Annotations
| ArrayExpress:VIT_15s0048g00810 | EMBL:FN596739 | EnsemblPlants:VIT_15s0048g00810.t01 | EnsemblPlantsGene:VIT_15s0048g00810 | ProteinID:CCB61392 | ProteinID:CCB61392.1 |
| UniParc:UPI000210A840 | UniProt:F6I375 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr15:+:14977231..14978548
Molecular Weight (calculated)
11142.9 Da
IEP (calculated)
10.256
GRAVY (calculated)
-0.287
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MGEGEKKRYK WIEIGPNITE AQKMTISQIS LKMTKRCKAL VKQIICFSPE ERSLSDLLAA WVKIMKPRRA DWLSVLKELG RLDHPLLLEA SRSCNSV
001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.