Factsheet for TraesCS2D01G128400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G125300.1	Wheat	plastid	95.05	95.05
TraesCS2B01G147800.1	Wheat	plastid	90.32	88.79
HORVU2Hr1G022100.1	Barley	plastid	79.35	81.28
EER99862	Sorghum	plastid	61.29	70.37
Zm00001d022514_P001	Maize	plastid	60.65	68.28
Os07t0661900-01	Rice	plastid	62.58	66.14
GSMUA_Achr11P...	Banana	cytosol	44.95	59.71
VIT_15s0048g00820.t01	Wine grape	cytosol	35.05	59.49
Solyc01g091450.2.1	Tomato	plastid	41.08	46.02
PGSC0003DMT400033219	Potato	cytosol	40.86	45.78
AT1G01970.1	Thale cress	mitochondrion	39.14	44.5
KRH00579	Soybean	cytosol	39.57	44.44
KRH40587	Soybean	cytosol	39.14	43.86
CDX90067	Canola	plastid	37.85	43.67
Bra033224.1-P	Field mustard	plastid	37.85	43.67
CDY15139	Canola	plastid	36.99	43.32
VIT_15s0048g00810.t01	Wine grape	cytosol	8.17	39.18
TraesCS6D01G202700.1	Wheat	mitochondrion	24.52	17.01

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS2D01G128400
EnsemblPlants:TraesCS2D01G128400.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:74936661..74938520

Molecular Weight (calculated)

51231.8 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.258

Length

465 amino acids

Sequence
(BLAST)

001: MVSLAAPAFH SLASQVSRAC TTRASSKCES APGRRGAKAR PRAAGTAQAA AVEAEETPRF RWDELGSDLS EPQEQAMRGL SPKLPNRCRA LMPRVLSLSP
101: GDENLGVVLA FWVKAMKPKR ADWLLVLKEL KAMESPLLAE VLEYALLEDS FEANVRDYTK LMQIYGKQNL LREAEEAFQA MKARGLPCDQ VMLTALVDMY
201: SKAGDLTRAK ETFEEIVLLG LPLDKRAYGS MIMAYIRADM LDQAEDLIKQ TEDQQVFAGK EVYKALLRAY SYKGDSEGAQ RVFDAVQFAG TVPDTKLCAL
301: LVNAYCLSNR IDEAVCVTRN MRSAGLEPCD KCVALILSAY EKANRLEGAL EFLAELEENG IVIGQEPSQL LAAWFGRLGV VHEVEQVLEE VSKSSKTKQS
401: VSVLKEGTKS GKSKDGVKKE WRKGRTSKHS ISVHQQPSIS VQMKGATNRK SRITQSITSA TEVIL

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.